[BioC] Analysing RNA-seq data

[Gordon K Smyth]

Dear Ingunn,

Once the data has been summarized as counts for transcripts, the edgeR 
package will do a good job of differential expression between conditions, 
assuming there are some replicates.

Best wishes
Gordon

> Date: Thu, 12 Feb 2009 10:18:17 +0100
> From: Ingunn Berget <ingunn.berget at umb.no>
> Subject: [BioC] Analysing RNA-seq data
> To: "bioconductor at stat.math.ethz.ch" <bioconductor at stat.math.ethz.ch>
>
> Are there any packages in Bioconductor for analysing RNA-seq data?
>
>
> Ingunn Berget (Dr. Scient)
> UMB, box 5003, IHA
> 1432 ?s
> Norway
>
> Centre for Integrative Genetics, www.cigene.no
> Centre for Biospectroscopy and Data Modelling, www.specmod.org