May 2008 Archives by thread

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Starting: Thu May 1 07:07:57 CEST 2008
Ending: Sat May 31 21:58:06 CEST 2008
Messages: 481

• [BioC] Bioconductor and R 2.7   Patrick Aboyoun
• [BioC] filtered CDF file results in errors   Sebastien Gerega
• [BioC] How can I see .C source code in affy package?   yeon-ki kim
  • [BioC] How can I see .C source code in affy package?   Kasper Daniel Hansen
    • [BioC] How can I see .C source code in affy package?   lgautier at altern.org
• [BioC] Cutoff for non-specific gene filtering?   Suraj Menon
• [BioC] GOstats gene set size selection   alex lam (RI)
• [BioC] Illumina annotation human v3   Pan Du
• [BioC] biocLite() failed to get CRAN package...   Jenny Drnevich
  • [BioC] biocLite() failed to get CRAN package...   Patrick Aboyoun
    • [BioC] XML Windows binary package added to 2.2/extra repos (was Re: biocLite() failed to get CRAN package...)   Patrick Aboyoun
• [BioC] ExpressionSet or MAList   Daniel Brewer
  • [BioC] ExpressionSet or MAList   Martin Morgan
    • [BioC] ExpressionSet or MAList   Daniel Brewer
• [BioC] BioC 2.2 now available   Martin Morgan
  • [BioC] Mac OS X Tiger builds now available (was Re: BioC 2.2 now available)   Patrick Aboyoun
• [BioC] filtered CDF file results in errors   Sebastien Gerega
  • [BioC] filtered CDF file results in errors   Sebastien Gerega
    • [BioC] filtered CDF file results in errors   lgautier at altern.org
• [BioC] Detection above background (dabg) within bioconductor   Daniel Brewer
  • [BioC] Detection above background (dabg) within bioconductor   cstrato
• [BioC] MIAME object and abstract   Daniel Brewer
  • [BioC] MIAME object and abstract   Robert Gentleman
    • [BioC] MIAME object and abstract   Daniel Brewer
      • [BioC] MIAME object and abstract   Martin Morgan
• [BioC] MAANOVA - Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent   Cecilia McGregor
  • [BioC] MAANOVA - Error in dimnames(x) <- dn : length of 'dimnames' [1] not equal to array extent   Marcelo Laia
• [BioC] new topGO results using GO.db very different from old ones using GO   Joern Toedling
  • [BioC] new topGO results using GO.db very different from old ones using GO   Tony Chiang
  • [BioC] new topGO results using GO.db very different from old ones using GO   Adrian Alexa
• [BioC] beadarray: how to apply imageplot() on BLData-outliers ?   Christian Kohler
  • [BioC] beadarray: how to apply imageplot() on BLData-outliers ?   Matt Ritchie
• [BioC] About Illumina annotation packages lumixxxAll.db   Pan Du
• [BioC] About Illumina annotation packages lumixxxAll.db   Pan Du
• [BioC] Where are the broadsets for GSEA?   Peter Robinson
  • [BioC] Where are the broadsets for GSEA?   Sean Davis
    • [BioC] Where are the broadsets for GSEA?   Martin Morgan
• [BioC] observations on affyprobeminer   Mark Kimpel
  • [BioC] observations on affyprobeminer   lgautier at altern.org
    • [BioC] observations on affyprobeminer   Mark Kimpel
      • [BioC] observations on affyprobeminer   lgautier at altern.org
  • [BioC] observations on affyprobeminer   Hongfang Liu
• [BioC] Bioinformatics Positions, National Cancer Centre Singapore   Julian Lee
• [BioC] Integrating hgu133a and hgu133a2   Chintanu
  • [BioC] Integrating hgu133a and hgu133a2   Chintanu
    • [BioC] Integrating hgu133a and hgu133a2   Robert Gentleman
• [BioC] GeneChip® EXON 1.0 ST Array Practical Data Analysis Course (June 2008)   rcaloger
• [BioC] heatmap and Hierarchical Clustering from limma results   Abhilash Venu
• [BioC] LumiBatch: problem when renaming samples   Cei Abreu-Goodger
  • [BioC] LumiBatch: problem when renaming samples   Wolfgang Huber
    • [BioC] LumiBatch: problem when renaming samples   Pan Du
    • [BioC] Vsn and rma with PM only arrays   Roumyana Yordanova
      • [BioC] Vsn and rma with PM only arrays   Wolfgang Huber
      • [BioC] Vsn and rma with PM only arrays   Roumyana Yordanova
      • [BioC] Vsn and rma with PM only arrays   lgautier at altern.org
      • [BioC] PM arrays   Roumyana Yordanova
• [BioC] new lumi and miRNA array data   Cei Abreu-Goodger
  • [BioC] new lumi and miRNA array data   Wolfgang Huber
• [BioC] splicing in Affymetrix   Dr Balazs Gyorffy
  • [BioC] splicing in Affymetrix   Christos Hatzis
• [BioC] Question about Error in next.fix:(next.fix + ncols - 1) : NA/NaN argument   Marcelo Laia
• [BioC] New Bioconductor package: rtracklayer   Michael Lawrence
• [BioC] converting gene name to affy probe   Ruppert Valentino
• [BioC] converting gene name to affy probe   Ruppert Valentino
  • [BioC] converting gene name to affy probe   Martin Morgan
• [BioC] ExpressionSet or MAList   Gordon K Smyth
  • [BioC] ExpressionSet or MAList   Wolfgang Huber
• [BioC] ExpressionSet or MAList   Gordon K Smyth
• [BioC] aCGH package - performance Issues   Julian Lee
  • [BioC] aCGH package - performance Issues   Diaz.Ramon
• [BioC] RCurl loading problem with 64 bit linux distribution   John Lande
  • [BioC] RCurl loading problem with 64 bit linux distribution   Loyal Goff
    • [BioC] RCurl loading problem with 64 bit linux distribution   Mark Kimpel
      • [BioC] RCurl loading problem with 64 bit linux distribution   Martin Morgan
      • [BioC] RCurl loading problem with 64 bit linux distribution   Joern Toedling
      • [BioC] RCurl loading problem with 64 bit linux distribution   Martin Morgan
      • [BioC] RCurl loading problem with 64 bit linux distribution   Duncan Temple Lang
      • [BioC] RCurl loading problem with 64 bit linux distribution   Kasper Daniel Hansen
• [BioC] he speak   donor in
• [BioC] affy mouse promoter tiling array analysis   Naira Naouar
• [BioC] MAANOVA comparison matrix question   Cecilia McGregor
• [BioC] Analyze miRNA experiment in Bioconductor   Paul Geeleher
  • [BioC] Analyze miRNA experiment in Bioconductor   Deepayan Sarkar
    • [BioC] Analyze miRNA experiment in Bioconductor   Paul Geeleher
      • [BioC] Analyze miRNA experiment in Bioconductor   Narendra Kaushik
      • [BioC] Analyze miRNA experiment in Bioconductor   Paul Geeleher
      • [BioC] Analyze miRNA experiment in Bioconductor   Wolfgang Huber
      • [BioC] Analyze miRNA experiment in Bioconductor   Paul Geeleher
• [BioC] Affy EXON Array: iterPLIER or RMA   juancui
• [BioC] call for bioc 2008 tutorial proposals   Vincent Carey 525-2265
• [BioC] global vs. separate in limma decideTests   Donna Toleno
• [BioC] aCGH package - performance Issues   Julian Lee
  • [BioC] aCGH package - performance Issues   Ramon Diaz-Uriarte
• [BioC] Significance Analysis of Microarrays (SAM)   Eleni Christodoulou
• [BioC] SAM quantitative analysis problems   IAIN GALLAGHER
• [BioC] Pairs plots in lumi, plots look different?   Julien Bauer
  • [BioC] Pairs plots in lumi, plots look different?   Matthias Kohl
• [BioC] AffyID in biomaRt?   Paolo Innocenti
  • [BioC] AffyID in biomaRt?   Steffen Durinck
• [BioC] bug in gcrma help CHM files?   Jenny Drnevich
  • [BioC] bug in gcrma help CHM files?   Patrick Aboyoun
    • [BioC] Updated CHM files now in BioC 2.2 Windows binary packages on bioconductor.org   Patrick Aboyoun
• [BioC] AnnBuilder: Where to find which files are needed from AnnBuilder:::getSrcUrl("all", <ORGANISM>) locations?   Johannes Graumann
  • [BioC] AnnBuilder: Where to find which files are needed from AnnBuilder:::getSrcUrl("all", <ORGANISM>) locations?   Marc Carlson
• [BioC] more samr woes   IAIN GALLAGHER
  • [BioC] more samr woes   Sean Davis
    • [BioC] more samr woes   IAIN GALLAGHER
      • [BioC] more samr woes   Holger Schwender
• [BioC] Input to vsn or limma of genepix file missing 635 columns   Liolios, Konstantinos [BSD] - MED
  • [BioC] Input to vsn or limma of genepix file missing 635 columns   Wolfgang Huber
    • [BioC] Input to vsn or limma of genepix file missing 635 columns   Liolios, Konstantinos [BSD] - MED
      • [BioC] Input to vsn or limma of genepix file missing 635 columns   Wolfgang Huber
• [BioC] Affymetrix Human Gene 1.0 ST Array   Hans-Ulrich Klein
  • [BioC] Affymetrix Human Gene 1.0 ST Array   cstrato
  • [BioC] Affymetrix Human Gene 1.0 ST Array   Crispin Miller
    • [BioC] Affymetrix Human Gene 1.0 ST Array   Crispin Miller
• [BioC] Advanced R/S-Plus Course by XLSolutions Corp / May 2008 in San Francisco & Boston   Sue Turner
• [BioC] cross species CGH Nimblegene arrays   mb23
  • [BioC] cross species CGH Nimblegene arrays   Sean Davis
• [BioC] Fwd: Re: cross species CGH Nimblegene arrays   mb23
  • [BioC] Fwd: Re: cross species CGH Nimblegene arrays   Sean Davis
    • [BioC] Fwd: Re: cross species CGH Nimblegene arrays   Robert Gentleman
• [BioC] Fwd: Re: cross species CGH Nimblegene arrays   mb23
• [BioC] global vs. separate in limma decideTests   Gordon K Smyth
• [BioC] hyperGTest Error in sqliteExecStatement...   Christopher Brown
  • [BioC] hyperGTest Error in sqliteExecStatement...   Robert Gentleman
• [BioC] problems loading the Rgraphviz package   LiGang
  • [BioC] problems loading the Rgraphviz package   Martin Morgan
    • [BioC] problems loading the Rgraphviz package   Jenny Drnevich
      • [BioC] problems loading the Rgraphviz package   Kasper Daniel Hansen
      • [BioC] problems loading the Rgraphviz package   Tony Chiang
      • [BioC] problems loading the Rgraphviz package   Kasper Daniel Hansen
      • [BioC] problems loading the Rgraphviz package   Artur Veloso
      • [BioC] problems loading the Rgraphviz package   Florian Hahne
      • [BioC] problems loading the Rgraphviz package   Martin Morgan
      • [BioC] problems loading the Rgraphviz package   Jenny Drnevich
• [BioC] Limma: Design matrix question   Daniel Brewer
  • [BioC] Limma design matrix - direct 2 color   John Fernandes
• [BioC] snapCGH and Nimblegen arrays   Gareth Wilson
• [BioC] Pairs plots in lumi, plots look different?   Pan Du
  • [BioC] Pairs plots in lumi, plots look different?   Wolfgang Huber
  • [BioC] Pairs plots in lumi, plots look different?   Kasper Daniel Hansen
    • [BioC] Pairs plots in lumi, plots look different?   Pan Du
      • [BioC] Pairs plots in lumi, plots look different?   Kasper Daniel Hansen
      • [BioC] Pairs plots in lumi, plots look different?   Pan Du
• [BioC] GCRMA-induced correlations? LARGE Change in GCRMA expression values   Richard Friedman
  • [BioC] GCRMA-induced correlations? LARGE Change in GCRMAexpression values   Hooiveld, Guido
• [BioC] create Affymetrix .chp file for viewing in affy Integrated Genome Browser   Shi, Tao
  • [BioC] create Affymetrix .chp file for viewing in affy Integrated Genome Browser   Kasper Daniel Hansen
• [BioC] Single channel (numerical intensities) data import into BioConductor   Dozmorov, Mikhail G. (HSC)
  • [BioC] Single channel (numerical intensities) data import into BioConductor   Marcelo Laia
    • [BioC] Single channel (numerical intensities) data import into BioConductor   Kort, Eric
• [BioC] create Affymetrix .chp file for viewing in affy Integrated Genome Browser   Shi, Tao
  • [BioC] create Affymetrix .chp file for viewing in affy Integrated Genome Browser   Steve Lianoglou
• [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   Dick Beyer
  • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   cstrato
    • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   Dick Beyer
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   cstrato
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   Dick Beyer
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   cstrato
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   Dick Beyer
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   cstrato
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   cstrato
      • [BioC] xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’   Dick Beyer
• [BioC] cross species CGH Nimblegene arrays   Alicia Oshlack
• [BioC] Can't make.cdf.env from HuEx-1_0-st-v2.text.cdf   Ng Stanley
  • [BioC] Can't make.cdf.env from HuEx-1_0-st-v2.text.cdf   James W. MacDonald
    • [BioC] Can't make.cdf.env from HuEx-1_0-st-v2.text.cdf   Henrik Bengtsson
• [BioC] cellHTS: help for NPI normalization   Klaus-Peter Pleissner
  • [BioC] cellHTS: help for NPI normalization   Florian Hahne
    • [BioC] cellHTS: help for NPI normalization   Wolfgang Huber
• [BioC] lumi annotation for Mouse Ref8 v1.1   Lauro Sumoy Van Dyck
• [BioC] lumi annotation for Mouse Ref8 v1.1   Pan Du
• [BioC] how to cite "lumi"?   Pan Du
• [BioC] create Affymetrix .chp file for viewing in affy Integrated Genome Browser   Shi, Tao
• [BioC] troubles with GEOquery   Pascal Barbry
  • [BioC] troubles with GEOquery   Sean Davis
• [BioC] Help using ENSMUSG ids in GOstats   John Reid
  • [BioC] Help using ENSMUSG ids in GOstats   Robert Gentleman
    • [BioC] Help using ENSMUSG ids in GOstats   John Reid
      • [BioC] Help using ENSMUSG ids in GOstats   Robert Gentleman
      • [BioC] Help using ENSMUSG ids in GOstats   John Reid
      • [BioC] Help using ENSMUSG ids in GOstats   James W. MacDonald
• [BioC] troubles with GEOquery   Sean Davis
• [BioC] computation of average of all probes but not the actual   Dr Balazs Gyorffy
  • [BioC] computation of average of all probes but not the actual   Thomas Girke
  • [BioC] computation of average of all probes but not the actual   Herve Pages
• [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Gordon K Smyth
  • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Paul Geeleher
    • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Sean Davis
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Paul Geeleher
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Paul Geeleher
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Sean Davis
    • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Gordon K Smyth
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Paul Geeleher
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Daniel Brewer
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Paul Geeleher
      • [BioC] Read single channel GenePix in limma [was: Analyze miRNA experiment in Bioconductor]   Gordon K Smyth
• [BioC] Input to vsn or limma of genepix file missing 635 columns   Gordon K Smyth
  • [BioC] Input to vsn or limma of genepix file missing 635 columns   Liolios, Konstantinos [BSD] - MED
• [BioC] makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array   Heidi Dvinge
  • [BioC] makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array   Sean Davis
    • [BioC] makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array   Heidi Dvinge
      • [BioC] makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array   Sean Davis
      • [BioC] makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array   lgautier at altern.org
      • [BioC] makecdfenv and multi-mapping probes on Mouse Gene 1.0 ST array   Kasper Daniel Hansen
• [BioC] select genes from a table above a threshold   Dr Balazs Gyorffy
  • [BioC] select genes from a table above a threshold   Thomas Girke
• [BioC] troubles with GEOquery   Sean Davis
• [BioC] select genes above a threshold from a table having multiple probes   Thomas Girke
• [BioC] Bioinformatics Engineer for Deep Sequencing   N S
• [BioC] normalization for data in a matrix   Federico Abascal
  • [BioC] normalization for data in a matrix   Sean Davis
• [BioC] Restriction enzyme digestion   Anh Tran
  • [BioC] Restriction enzyme digestion   Kort, Eric
    • [BioC] Restriction enzyme digestion   Anh Tran
  • [BioC] Restriction enzyme digestion   hpages at fhcrc.org
    • [BioC] Restriction enzyme digestion   hpages at fhcrc.org
    • [BioC] Restriction enzyme digestion   Herve Pages
      • [BioC] Restriction enzyme digestion   Anh Tran
      • [BioC] Restriction enzyme digestion   Anh Tran
      • [BioC] Restriction enzyme digestion   Herve Pages
      • [BioC] Restriction enzyme digestion   Anh Tran
• [BioC] lumi: error when plotting CV for lumi expression set   Sebastien Gerega
  • [BioC] lumi: error when plotting CV for lumi expression set   Sean Davis
• [BioC] trouble getting connection to Ensembl using biomaRt   Joern Toedling
  • [BioC] trouble getting connection to Ensembl using biomaRt   James W. MacDonald
  • [BioC] trouble getting connection to Ensembl using biomaRt   Steffen Durinck
• [BioC] warning message of lumiR   Pan Du
• [BioC] Affymetrix Human Gene 1.0 ST Array   Hans-Ulrich Klein
• [BioC] Integer index for mitochondrial chromosome?   Henrik Bengtsson
• [BioC] Unable to load in Affymetrix data CEL files with readCelHeader   Matt K
  • [BioC] Unable to load in Affymetrix data CEL files with readCelHeader   Robert Gentleman
    • [BioC] Unable to load in Affymetrix data CEL files with readCelHeader   Henrik Bengtsson
      • [BioC] Unable to load in Affymetrix data CEL files with readCelHeader   Matt K
• [BioC] Discretization   Andrej Kastrin
  • [BioC] Discretization   Sean Davis
  • [BioC] Discretization   Steve Lianoglou
    • [BioC] Discretization   Rand, Hugh
• [BioC] Fwd: Question about normalizing one color Agilent array using loess   Eugene Bolotin
  • [BioC] Fwd: Question about normalizing one color Agilent array using loess   Wolfgang Huber
    • [BioC] Fwd: Question about normalizing one color Agilent array using loess   Artur Veloso
• [BioC] FW:   Yogi Sundaravadanam
• [BioC] Accidentally sent an email to the list   Yogi Sundaravadanam
• [BioC] AnnonationDbi inteface with RApache   Francesco Favero
• [BioC] time course design matrix   Endre Sebestyen
• [BioC] question about LIMMA   Erika Melissari
• [BioC] question about affymetrix exon ST array   peach gil
• [BioC] gcRMA: problem compute.affinities.local on gngnf1musa   Julien Roux
  • [BioC] gcRMA: problem compute.affinities.local on gngnf1musa   James W. MacDonald
    • [BioC] gcRMA: problem compute.affinities.local on gngnf1musa   Julien Roux
• [BioC] help about ReadAffy() erro   xiong mody0911
  • [BioC] help about ReadAffy() erro   James W. MacDonald
    • [BioC] help about ReadAffy() erro   Tony Chiang
• [BioC] We represent you mane vocancies!   Konstanze guler
• [BioC] problems about XML dtd entity   LiGang
  • [BioC] problems about XML dtd entity   Martin Morgan
• [BioC] converting gene name to affy probe   Ruppert Valentino
  • [BioC] converting gene name to affy probe   James W. MacDonald
    • [BioC] converting gene name to affy probe   Ruppert Valentino
• [BioC] Multiple colours in GenomeGraphs?   Mark Dunning
  • [BioC] Multiple colours in GenomeGraphs?   James Bullard
• [BioC] GSEABase error in parsing msigdb_v2.5.xml   Vladimir Morozov
  • [BioC] GSEABase error in parsing msigdb_v2.5.xml   Martin Morgan
• [BioC] GSEABase how to map gene symbols to mouse EntrezId or Affy   Vladimir Morozov
  • [BioC] GSEABase how to map gene symbols to mouse EntrezId or Affy   Marc Carlson
  • [BioC] GSEABase how to map gene symbols to mouse EntrezId or Affy   Martin Morgan
    • [BioC] GSEABase how to map gene symbols to mouse EntrezId or Affy   Vladimir Morozov
      • [BioC] GSEABase how to map gene symbols to mouse EntrezId or Affy   Martin Morgan
• [BioC] RCurl compilation error - fedora 7   martin sikora
  • [BioC] RCurl compilation error - fedora 7   Robert Gentleman
    • [BioC] RCurl compilation error - fedora 7   martin sikora
  • [BioC] RCurl compilation error - fedora 7   Joern Toedling
• [BioC] question on affyQCReport vignette   Mark Kimpel
  • [BioC] question on affyQCReport vignette   Keith Satterley
    • [BioC] question on affyQCReport vignette   Mark Kimpel
• [BioC] lumiMouseV1 trouble   Davis, Wade
• [BioC] heatmap.2 - centering the color ramp   Hartmut Scheel
  • [BioC] heatmap.2 - centering the color ramp   Artur Veloso
  • [BioC] heatmap.2 - centering the color ramp   Kauer Maximilian Otto
• [BioC] Bug in base.profiles.nc (gcrma)?   Heidi Dvinge
  • [BioC] Bug in base.profiles.nc (gcrma)?   Tony Chiang
    • [BioC] Bug in base.profiles.nc (gcrma)?   Heidi Dvinge
• [BioC] GEOquery package   Balko, Justin M
  • [BioC] GEOquery package   Robert Gentleman
  • [BioC] GEOquery package   Tony Chiang
• [BioC] connect to HapMart with biomaRt   Richard Pearson
  • [BioC] connect to HapMart with biomaRt   Steffen Durinck
• [BioC] BIRD 08: Call for participants   Prof. Roland Wagner
• [BioC] Rtreemix (NEW package)   Jasmina Bogojeska
• [BioC] lumiMouseV1 trouble   Pan Du
• [BioC] Questions about Disease Progression Analysis   LiGang
  • [BioC] Questions about Disease Progression Analysis   Sean Davis
    • [BioC] Questions about Disease Progression Analysis   LiGang
      • [BioC] Questions about Disease Progression Analysis   Sean Davis
• [BioC] different probe level data at computer cluster   Markus Schmidberger
  • [BioC] different probe level data at computer cluster   Richard Pearson
  • [BioC] different probe level data at computer cluster   Martin Morgan
    • [BioC] different probe level data at computer cluster   Markus Schmidberger
    • [BioC] different probe level data at computer cluster   Markus Schmidberger
• [BioC] Finding genes with significant linear regression or trend   Daniel Brewer
  • [BioC] Finding genes with significant linear regression or trend   Sean Davis
    • [BioC] Finding genes with significant linear regression or trend   Daniel Brewer
      • [BioC] Finding genes with significant linear regression or trend   Kevin R. Coombes
    • [BioC] Finding genes with significant linear regression or trend   IAIN GALLAGHER
  • [BioC] Finding genes with significant linear regression or trend   Ana Conesa
• [BioC] oligo ids   Eleni Christodoulou
  • [BioC] oligo ids   Sean Davis
• [BioC] OddsRatio in COstats   Mikhail Pachkov
  • [BioC] OddsRatio in COstats   James W. MacDonald
• [BioC] find overlapping regions   M.Boetzer at lumc.nl
  • [BioC] find overlapping regions   Martin Morgan
  • [BioC] find overlapping regions   Joern Toedling
    • [BioC] find overlapping regions   M.Boetzer at lumc.nl
• [BioC] Color x-labels in hclust   Vladimir Krasikov
• [BioC] hexbin + pairs   Terry Therneau
  • [BioC] hexbin + pairs   Deepayan Sarkar
• [BioC] description entry in Biobase makeDataPackage   James F. Reid
  • [BioC] description entry in Biobase makeDataPackage   Martin Morgan
• [BioC] affxparser: writeTpmap error (in as.vector(y))   Andreas Heinzel
  • [BioC] affxparser: writeTpmap error (in as.vector(y))   Kasper Daniel Hansen
    • [BioC] affxparser: writeTpmap error (in as.vector(y))   Kasper Daniel Hansen
• [BioC] Error in rma When Using Temp File from xps Package   cstrato
• [BioC] 6 Courses: Upcoming June-July 2008 R/S+ Course Schedule by XLSolutions Corp   Sue Turner
• [BioC] Finding genes with significant linear regression, or trend   Assaf Oron
• [BioC] limma: plotMA for RGList objects   Philipp Pagel
• [BioC] Reminder - LASR2008: The Art and Science of Statistical Bioinformatics   A Gusnanto
• [BioC] Specific annotation information from ExpressionSet   Daniel Brewer
  • [BioC] Specific annotation information from ExpressionSet   Sean Davis
    • [BioC] Specific annotation information from ExpressionSet   Daniel Brewer
      • [BioC] Specific annotation information from ExpressionSet   Martin Morgan
• [BioC] heatmap and cluster with marray   Abhilash Venu
  • [BioC] heatmap and cluster with marray   Artur Veloso
  • [BioC] heatmap and cluster with marray   Sean Davis
• [BioC] cannot allocate vector of size 762 Mo ! One more time !   Germain Paimparay
  • [BioC] cannot allocate vector of size 762 Mo ! One more time !   Kort, Eric
  • [BioC] cannot allocate vector of size 762 Mo ! One more time !   cstrato
• [BioC] Variance correction, coxph or cph model   aedin
• [BioC] Obtaining Raw Intensity Values and Metadata for Exon Arrays in xps   Steve Piccolo
• [BioC] limma: plotMA for RGList objects   Gordon K Smyth
• [BioC] Bioinformatics Faculty Position available at UCSF Cancer Center   Ru-Fang Yeh
• [BioC] AnnotationDbi Packages/hyperGTest: Possible to avoid explicit mapping back to ENTREZ IDs?   Johannes Graumann
  • [BioC] AnnotationDbi Packages/hyperGTest: Possible to avoid explicit mapping back to ENTREZ IDs?   Robert Gentleman
• [BioC] heatmap.2/Interactive Dendrogram Node selection?   Johannes Graumann
• [BioC] flowClust package - how to get it installed   Anne
  • [BioC] flowClust package - how to get it installed   Kort, Eric
    • [BioC] flowClust package - how to get it installed   Martin Morgan
      • [BioC] flowClust package - how to get it installed   Anne
• [BioC] lumi: target ids versus probe ids?   Michal Blazejczyk
  • [BioC] lumi: target ids versus probe ids?   Sean Davis
    • [BioC] lumi: target ids versus probe ids?   Michal Blazejczyk
      • [BioC] lumi: target ids versus probe ids?   Sean Davis
  • [BioC] lumi: target ids versus probe ids?   Mark Dunning
• [BioC] BioC 2008 updates   Robert Gentleman
• [BioC] Methods for building heatmap for Illumina gene expression data   ss
  • [BioC] Methods for building heatmap for Illumina gene expression data   Sean Davis
    • [BioC] Methods for building heatmap for Illumina gene expression data   ss
      • [BioC] Methods for building heatmap for Illumina gene expression data   Sean Davis
      • [BioC] Methods for building heatmap for Illumina gene expression data   ss
      • [BioC] Methods for building heatmap for Illumina gene expression data   Sean Davis
      • [BioC] Methods for building heatmap for Illumina gene expression data   ss
• [BioC] Employment opportunities   Martin Morgan
• [BioC] subsetting an ExpressionSetIllumina object?   Jenny Drnevich
  • [BioC] subsetting an ExpressionSetIllumina object?   Jenny Drnevich
  • [BioC] subsetting an ExpressionSetIllumina object?   Matt Ritchie
• [BioC] GraphAT help?   Paul Shannon
  • [BioC] GraphAT help?   Vincent Carey 525-2265
• [BioC] install new bioconductor packages R2.7.0 - affy   P.A.C._t_Hoen at lumc.nl
  • [BioC] install new bioconductor packages R2.7.0 - affy   Martin Morgan
• [BioC] Problems with oligo and pd.genomewidesnp.6   Jeremy Silver
  • [BioC] Problems with oligo and pd.genomewidesnp.6   Vincent Carey 525-2265
  • [BioC] Problems with oligo and pd.genomewidesnp.6   Vincent Carey 525-2265
• [BioC] open Junior group leader position, Medical University of Innsbruck, Austria   Johannes Rainer
• [BioC] Bioinformatics position available   Marcus Harrison
• [BioC] Issue with gcrma.engine2 and user-defined negative controls   Heidi Dvinge
• [BioC] Rank Products- breast cancer   Eleni Christodoulou
• [BioC] About Illumina annotation IDENTIFIERS   YANG Ling
  • [BioC] About Illumina annotation IDENTIFIERS   Sean Davis
    • [BioC] About Illumina annotation IDENTIFIERS   Lynn Amon
• [BioC] MBNI custom CDF packages   burak kutlu
• [BioC] Positions at the Department of Medical Statistics and Bioinformatics in Leiden   J.J.Goeman at lumc.nl
• [BioC] Building BioC 2.2 with R 2.7.0   Atro Tossavainen
  • [BioC] Building BioC 2.2 with R 2.7.0   Kasper Daniel Hansen
    • [BioC] Building BioC 2.2 with R 2.7.0   Robert Gentleman
      • [BioC] Building BioC 2.2 with R 2.7.0   Atro Tossavainen
      • [BioC] Building BioC 2.2 with R 2.7.0   Groot, Philip de
      • [BioC] Building BioC 2.2 with R 2.7.0   Atro Tossavainen
      • [BioC] Building BioC 2.2 with R 2.7.0   Atro Tossavainen
      • [BioC] Building BioC 2.2 with R 2.7.0   Robert Gentleman
      • [BioC] Building BioC 2.2 with R 2.7.0   Atro Tossavainen
      • [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Yan Zhou
      • [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Steve Lianoglou
      • [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Patrick Aboyoun
      • [BioC] Rcurl 0.8-1 update for bioconductor 2.7   Yan Zhou
• [BioC] IMPORTANT - Customer Service Message   Halifax Bank Plc
• [BioC] MBNI custom CDF packages   Manhong Dai
  • [BioC] MBNI custom CDF packages   Henrik Bengtsson
    • [BioC] MBNI custom CDF packages   Dai, Manhong
• [BioC] BSgenome: dm3 and panTro2   joseph
  • [BioC] BSgenome: dm3 and panTro2   Herve Pages
    • [BioC] BSgenome: dm3 and panTro2   Herve Pages
      • [BioC] BSgenome: dm3 and panTro2   Herve Pages
• [BioC] The metadata in an Affymetrix CDF   Steve Lianoglou
• [BioC] parameters in graph.par in Rgraphviz   Paolo Innocenti
• [BioC] Lakshmanan Iyer has sent you a hi5 Friend Request   Lakshmanan Iyer
  • [BioC] Lakshmanan Iyer has sent you a hi5 Friend Request   Thomas Hampton
• [BioC] The metadata in an Affymetrix CDF   Steve Lianoglou
• [BioC] Ludmila Pizarro enviou para você uma Solicitação de amizade hi5   Ludmila Pizarro
• [BioC] making gene sets for geneSetTest of Limma   Srinivas Iyyer
  • [BioC] making gene sets for geneSetTest of Limma   Martin Morgan
    • [BioC] making gene sets for geneSetTest of Limma   Srinivas Iyyer
• [BioC] Filtering in Beadarray package   ss
  • [BioC] Filtering in Beadarray package   Sean Davis
    • [BioC] Filtering in Beadarray package   ss
      • [BioC] Filtering in Beadarray package   Sean Davis
      • [BioC] Filtering in Beadarray package   Mark Dunning
      • [BioC] Filtering in Beadarray package   ss
      • [BioC] Filtering in Beadarray package   Sean Davis
• [BioC] Error using Ringos readNimblegen   Morten Hansen
  • [BioC] Error using Ringos readNimblegen   Joern Toedling
• [BioC] affymertrix normalization: reference sample   John Lande
• [BioC] How to display the row label of a heatmap at the end of dendrogram branches?   carol white
  • [BioC] How to display the row label of a heatmap at the end of dendrogram branches?   Sean Davis
    • [BioC] How to display the row label of a heatmap at the end of dendrogram branches?   Matthias Kohl
  • [BioC] How to display the row label of a heatmap at the end of dendrogram branches?   Artur Veloso
    • [BioC] How to display the row label of a heatmap at the end of dendrogram branches?   carol white
      • [BioC] How to display the row label of a heatmap at the end of dendrogram branches?   Artur Veloso
• [BioC] custom-made annotation packages   Samuel Wuest
  • [BioC] custom-made annotation packages   Marc Carlson
• [BioC] custom-made annotation packages   Samuel Wuest
  • [BioC] custom-made annotation packages   Marc Carlson
• [BioC] problem installing package GOstats   Artur Veloso
  • [BioC] problem installing package GOstats   James W. MacDonald
• [BioC] D entists Listing in the USA   Goff stank
• [BioC] Earn 10 % from the sum every day with us!   advert at seek.com.au
• [BioC] scholarship application period extended   Vincent Carey 525-2265
• [BioC] questions about factorial design analysis   Wei Xu
  • [BioC] questions about factorial design analysis   Vincent Carey 525-2265
• [BioC] topGO w/custom annotation   Sebastien Gerega
  • [BioC] topGO w/custom annotation   James W. MacDonald
    • [BioC] topGO w/custom annotation   Sebastien Gerega
      • [BioC] topGO w/custom annotation   James MacDonald
      • [BioC] topGO w/custom annotation   Artur Veloso
• [BioC] Illumina chip analysis - normalisation   Yogi Sundaravadanam
  • [BioC] Illumina chip analysis - normalisation   Sean Davis
  • [BioC] Illumina chip analysis - normalisation   Wei Shi
• [BioC] lumi, lumiHumanV2 and GOstats   Al Ivens
  • [BioC] lumi, lumiHumanV2 and GOstats   James W. MacDonald
    • [BioC] lumi, lumiHumanV2 and GOstats   Al Ivens
• [BioC] Invitation from eng_inf at hotmail.com   eng_inf at hotmail.com
• [BioC] Issues with lumiMouseAll.db vs lumiMouseV1   Cei Abreu-Goodger
• [BioC] Probes vs Genes/Targets for Illumina BeadChips   Cei Abreu-Goodger
• [BioC] making gene sets for geneSetTest of Limma   Gordon K Smyth
• [BioC] How to plot Gene Ontology categories   ss
• [BioC] Colors in cColor from geneplotter   Heidi Dvinge
• [BioC] How to plot Gene Ontology categories   Stephen Henderson
• [BioC] extracting regions of consecutive values from dataframe   Niels Høgslund
  • [BioC] extracting regions of consecutive values from dataframe   Sean Davis
    • [BioC] extracting regions of consecutive values from dataframe   Vincent Carey 525-2265
  • [BioC] extracting regions of consecutive values from dataframe   Herve Pages
• [BioC] GenBank RefSeq conversion   Eleni Christodoulou
  • [BioC] GenBank RefSeq conversion   Sean Davis
    • [BioC] GenBank RefSeq conversion   Marc Carlson
• [BioC] Lausanne BioC Devel 2008 - slides on the web   Darlene Goldstein
• [BioC] loess plot   shetumi at aim.com
  • [BioC] loess plot   Sean Davis
• [BioC] HumanRef-8_V3   Tarca, Adi
  • [BioC] HumanRef-8_V3   Marc Carlson
    • [BioC] HumanRef-8_V3   Tarca, Adi
  • [BioC] HumanRef-8_V3   Lynn Amon
    • [BioC] HumanRef-8_V3   Tarca, Adi
      • [BioC] HumanRef-8_V3   Lynn Amon
      • [BioC] HumanRef-8_V3   Tarca, Adi
      • [BioC] HumanRef-8_V3   Lynn Amon
      • [BioC] HumanRef-8_V3   Tarca, Adi
• [BioC] Help on data processing using *lumi* package   ss
  • [BioC] Help on data processing using *lumi* package   Sean Davis
    • [BioC] Help on data processing using *lumi* package   ss
• [BioC] Contact List of orthopedics surgeons and much more   Osvaldo planoconvex
• [BioC] limma and marray data import problem   Piotr Stępniak
• [BioC] Limma user’s guide example data sets   Wang, Jixin

Last message date: Sat May 31 21:58:06 CEST 2008
Archived on: Sat May 31 21:58:39 CEST 2008

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