[BioC] troubles with GEOquery
Pascal Barbry
barbry at ipmc.cnrs.fr
Sat May 10 00:34:44 CEST 2008
Hi all,
I have troubles trying to download GSE files from GEO:
library(GEOquery)
GSE6281 <- getGEO("GSE6281", GSEMatrix = FALSE).
Surprisingly, the example found in the help file is working nicely:
gse <- getGEO("GSE462", GSEMatrix = FALSE)
?????!!!.............
My troubles started after switching to the new version of Bioconductor. As I am using a Windows OS and that some of the
getGEO options are not windows-proof, I was wondering if any others had experienced a similar situation? Any idea
(outside swtching to Linux) would be appreciated.
Thanks in advance,
Pascal
> sessionInfo()
R version 2.7.0 (2008-04-22)
i386-pc-mingw32
locale:
LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] GEOquery_2.4.0 RCurl_0.9-2 Biobase_2.0.1
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