[BioC] troubles with GEOquery

[Sean Davis]

On Fri, May 9, 2008 at 6:34 PM, Pascal Barbry <barbry at ipmc.cnrs.fr> wrote:
> Hi all,
> I have troubles trying to download GSE files from GEO:
> library(GEOquery)
> GSE6281 <- getGEO("GSE6281", GSEMatrix = FALSE).
>
> Surprisingly, the example found in the help file is working nicely:
> gse <- getGEO("GSE462", GSEMatrix = FALSE)
>
> ?????!!!.............
>
> My troubles started after switching to the new version of Bioconductor. As I
> am using a Windows OS and that some of the getGEO options are not
> windows-proof, I was wondering if any others had experienced a similar
> situation? Any idea (outside swtching to Linux) would be appreciated.

Hi, Pascal.  What problems are you having?  You didn't give a report
of the errors that you received.

Sean


>> sessionInfo()
> R version 2.7.0 (2008-04-22)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=French_France.1252;LC_CTYPE=French_France.1252;LC_MONETARY=French_France.1252;LC_NUMERIC=C;LC_TIME=French_France.1252
>
> attached base packages:
> [1] tools     stats     graphics  grDevices utils     datasets  methods
> [8] base
>
> other attached packages:
> [1] GEOquery_2.4.0 RCurl_0.9-2    Biobase_2.0.1
>
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