[BioC] GEOquery package

[Robert Gentleman]

Balko, Justin M wrote:
> Hello,
> Im running R 2.5.0
Hi Justin,

   2.7.0 is  the current version of R, so updating it is the first thing 
to do.  Then please tell us what version of GEOquery you tried to 
install (probably it is not designed for R 2.5.0, and hence your problem).

   best wishes
     Robert

> When I load the R package GEOquery, I am getting the following error:
> 
> the part of the args list of 'list' being evaluated was:
>    (header = list(), )
> Error in makeClassRepresentation(Class, properties, superClasses, prototype,  :
>         element 2 is empty
> Error : unable to load R code in package 'GEOquery'
> Error: package/namespace load failed for 'GEOquery'
> 
> Seems to have installed fine, or maybe not.
> 
> package 'GEOquery' successfully unpacked and MD5 sums checked
> updating HTML package descriptions
> 
> Any insight?
> Thanks!
> 
> 
> al({pkg <- select.list(sort(.packages(all.available = TRUE)))
> + if(nchar(pkg)) library(pkg, character.only=TRUE)})
> the part of the args list of 'list' being evaluated was:
>    (header = list(), )
> Error in makeClassRepresentation(Class, properties, superClasses, prototype,  :
>         element 2 is empty
> Error : unable to load R code in package 'GEOquery'
> Error: package/namespace load failed for 'GEOquery'
> 
> Justin Balko, PharmD
> Graduate Student
> Dept of Pharmaceutical Sciences
> University of Kentucky
> 441 College of Pharmacy
> 725 Rose St
> Lexington, KY 40536
> 859-257-2577
> 
> 
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-- 
Robert Gentleman, PhD
Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M2-B876
PO Box 19024
Seattle, Washington 98109-1024
206-667-7700
rgentlem at fhcrc.org