[BioC] Can't make.cdf.env from HuEx-1_0-st-v2.text.cdf

[James W. MacDonald]

Hi Stanley,

If you had taken the time to do a couple of searches, you would have found:

a.) The makecdfenv/affy pipeline doesn't handle exon arrays.
b.) The error you see is because you don't have enough memory.

To do any exon analysis you could use makePlatformDesign/oligo, xps or 
exonmap. Two of which will likely require a machine with more RAM than 
you currently have. You might be able to get by using xps.

Best,

Jim



Ng Stanley wrote:
> Hi
> 
> I am having difficulties creating the cdfenv for Human Exon 1.0 st.
> 
>> HuEx10stv2cdf <- make.cdf.env("libv1/HuEx-1_0-st-v2.text.cdf")
> Reading CDF file.
> Error: cannot allocate vector of size 1 Kb
> 
> Thanks
> Stanley
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623