[BioC] HumanRef-8_V3

[Tarca, Adi]

Hi Lynn,
I am aware that these packges work with probe IDs and not with target
IDs. However there are probe IDs on the HumanRef-8_V3 that could not be
found in  either two packages lumiHumanAll.db and
illuminaHumanv3ProbeID.db.

e.g:
> x<-illuminaHumanv3ProbeIDSYMBOL
> aT1$Symbol<-as.vector(unlist( as.list(x[aT1$ID]) ))
Error in .checkKeys(value, Lkeys(x), x at ifnotfound) : 
  value for "6250095" not found

However I was able to build my own annotation package using
makeHUMANCHIP_DB function.

Thanks,
Adi


-----Original Message-----
From: Lynn Amon [mailto:lamon at fhcrc.org] 
Sent: Friday, May 30, 2008 12:55 PM
To: Tarca, Adi
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] HumanRef-8_V3

The illumina annotation packages use the probe ID rather than the target

id output by illumina's analysis software.  If you use the .txt or .csv 
files output by the scanner, you will have probe IDs that match the 
existing annotation packages.
Lynn Amon


Tarca, Adi wrote:
> Hi all,
>
> Did anyone make a package for the Illumina HumanRef-8_V3 array?
> I have tried both lumiHumanAll.db and illuminaHumanv3ProbeID.db but
they
> no not recognize the IDs on this array.
>
> Thanks,
>
> Adi Tarca
>
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