[BioC] Where are the broadsets for GSEA?

Peter Robinson peter.robinson at t-online.de
Sat May 3 15:53:18 CEST 2008


Hi all,

I would like to try the tutorial on gene set enrichment analysis as 
given here:


http://www.biostat.harvard.edu/%7Ecarey/bos08bct/pathcase.pdf



however,

if (!exists("broadsets")) load("broadsets.rda")


fails

 > if (!exists("broadsets")) load("broadsets.rda")
Fehler in readChar(con, 5) : kann Verbindung nicht öffnen
Zusätzlich: Warning message:
In readChar(con, 5) :
  cannot open compressed file 'broadsets.rda', probable reason 'Datei 
oder Verzeichnis nicht gefunden'
 >                       
My session info;

 > sessionInfo()
R version 2.6.2 (2008-02-08)
i486-pc-linux-gnu

locale:
LC_CTYPE=de_DE at euro;LC_NUMERIC=C;LC_TIME=de_DE at euro;LC_COLLATE=de_DE at euro;LC_MONETARY=de_DE at euro;LC_MESSAGES=de_DE at euro;LC_PAPER=de_DE at euro;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=de_DE at euro;LC_IDENTIFICATION=C

attached base packages:
[1] tools     stats     graphics  grDevices utils     datasets  methods
[8] base

other attached packages:
[1] GSEABase_1.0.3      AnnotationDbi_1.0.6 RSQLite_0.6-4
[4] DBI_0.2-4           Biobase_1.16.1

loaded via a namespace (and not attached):
[1] rcompgen_0.1-17 XML_1.93-2
 >                                    


Thanks for any advice, Peter



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