[BioC] Where are the broadsets for GSEA?
Peter Robinson
peter.robinson at t-online.de
Sat May 3 15:53:18 CEST 2008
Hi all,
I would like to try the tutorial on gene set enrichment analysis as
given here:
http://www.biostat.harvard.edu/%7Ecarey/bos08bct/pathcase.pdf
however,
if (!exists("broadsets")) load("broadsets.rda")
fails
> if (!exists("broadsets")) load("broadsets.rda")
Fehler in readChar(con, 5) : kann Verbindung nicht öffnen
Zusätzlich: Warning message:
In readChar(con, 5) :
cannot open compressed file 'broadsets.rda', probable reason 'Datei
oder Verzeichnis nicht gefunden'
>
My session info;
> sessionInfo()
R version 2.6.2 (2008-02-08)
i486-pc-linux-gnu
locale:
LC_CTYPE=de_DE at euro;LC_NUMERIC=C;LC_TIME=de_DE at euro;LC_COLLATE=de_DE at euro;LC_MONETARY=de_DE at euro;LC_MESSAGES=de_DE at euro;LC_PAPER=de_DE at euro;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=de_DE at euro;LC_IDENTIFICATION=C
attached base packages:
[1] tools stats graphics grDevices utils datasets methods
[8] base
other attached packages:
[1] GSEABase_1.0.3 AnnotationDbi_1.0.6 RSQLite_0.6-4
[4] DBI_0.2-4 Biobase_1.16.1
loaded via a namespace (and not attached):
[1] rcompgen_0.1-17 XML_1.93-2
>
Thanks for any advice, Peter
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