[BioC] About Illumina annotation IDENTIFIERS
sdavis2 at mail.nih.gov
Sun May 25 16:12:37 CEST 2008
On Sun, May 25, 2008 at 9:46 AM, YANG Ling <ling.yang at picb.ac.cn> wrote:
> Hi, Lynn,
> I downloaded the illuminaHumanv2ProbeID.db package and want to plot some
> genes on chromosomes. But the identifiers used in this packages are not the
> same with the annotation file provided by GEO database. The latter use
> TARGET ID(ex, GI-****).
> Could you please tell me what are the identifiers preferred in the
> illuminaHumanv2ProbeID.db package? And HOW could I change those TARGET ID
> used by GEO database to the most easily-used ones for
The package uses ProbeID rather than target ID. What GEO accession
are you trying to access? The probe ID might or might not be in the
GEO platform file.
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