[BioC] HumanRef-8_V3

[Tarca, Adi]

Thanks Marc,
I created the packed using SQLForge. It was really helpful your advice.
Regards,
Adi

-----Original Message-----
From: Marc Carlson [mailto:mcarlson at fhcrc.org] 
Sent: Friday, May 30, 2008 12:17 PM
To: Tarca, Adi
Cc: bioconductor at stat.math.ethz.ch
Subject: Re: [BioC] HumanRef-8_V3

Tarca, Adi wrote:
> Hi all,
>
> Did anyone make a package for the Illumina HumanRef-8_V3 array?
> I have tried both lumiHumanAll.db and illuminaHumanv3ProbeID.db but
they
> no not recognize the IDs on this array.
>
> Thanks,
>
> Adi Tarca
>   

If you need an annotation package other than the ones we provide, you 
can use the SQLForge function in AnnotationDbi to quickly make one.  All

you need is the IDs that you want to use paired up with some standard ID

type (entrez gene, unigene, refseq etc.) in a tab delimited format and 
you can make your own annotation package on any of the supported 
organisms (human, rat mouse etc.).  You can see the vignette here for 
more information:

http://www.bioconductor.org/packages/2.2/bioc/html/AnnotationDbi.html


    Marc