[BioC] affxparser: writeTpmap error (in as.vector(y))

[Kasper Daniel Hansen]

I have committed a fix to the devel branch. The fixed version is  
1.13.3. You should be able to get it soon. Just download it manually  
and install under R-2.7.0 if you want to avoid using R-devel. There is  
nothing that is dependent on anything in bioc-devel or r-devel.

Kasper

On May 20, 2008, at 7:22 PM, Kasper Daniel Hansen wrote:

> This function is broken and (consulting svn) has been broken for a  
> long time. A fix is reasonably easy, I will commit something later  
> today. Thanks for the report.
>
> Kasper
>
> On May 20, 2008, at 9:52 AM, Andreas Heinzel wrote:
>
>> hi,
>>
>> i'm trying to use readBpmap to read an affymetrix bpmap file and  
>> writeTpmap to save it as text-bpmap file.
>>
>> reading seems to work fine, but the writeTpmap function dies with  
>> the following error:
>> Writing sequence AffxCtrl:v1;r2_Tag
>> Fehler in as.vector(y) : Argument "y" fehlt (ohne Standardwert)
>>
>> i'm using:
>> R 2.7 on Mac
>> affxparser 1.12.2
>>
>> tried:
>> GeneChip Drosophila Tiling 1.0R Array
>> Dm35b_MF_v02-3_BDGPv4h.bpmap (http://www.affymetrix.com/Auth/support/downloads/library_files/drosophila_tiling1r_libraryfile.zip 
>> )
>> GeneChip Chromosome 21/22 1.0 Array Set
>> Chrom21_22B_F_v04-2_NCBIv30.bpmap
>> (http://www.affymetrix.com/Auth/support/downloads/library_files/chrom21_22_libraryfile.zip 
>> )
>>
>> Best regards
>> Andreas
>>
>> _______________________________________________
>> Bioconductor mailing list
>> Bioconductor at stat.math.ethz.ch
>> https://stat.ethz.ch/mailman/listinfo/bioconductor
>> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor