[BioC] more samr woes

Sean Davis sdavis2 at mail.nih.gov
Wed May 7 22:52:09 CEST 2008

On Wed, May 7, 2008 at 11:39 AM, IAIN GALLAGHER
<iaingallagher at btopenworld.com> wrote:
> I've mostly solved my previous problem with samr (an issue with datatypes). However I now have the following problem. Whilst I can generate a sam.object and compute a delta table I cannot get samr to generate a list of significant genes.
>  The samr.compute.siggenes.table fails with:
>  Error in dimnames(res.up) = temp.names :
>   length of 'dimnames' [2] not equal to array extent
>  This is after quantitative analysis.
>  Can anyone help with this?

Hi, Iain.  Your best bet is to write to the package maintainer (who
may not be on this list since samr is not a bioconductor package).

As an alternative, have you considered the siggenes package for
performing your sam analysis?


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