[BioC] affy mouse promoter tiling array analysis

[Naira Naouar]

Hi,

I just found out that Mahong Dai proposed some tiling arrays custom cdfs 
that can be found here:
http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/CDF_download_v10.asp

The way this CDFs were built is described in this paper:
http://nar.oxfordjournals.org/cgi/content/full/33/20/e175

Hope this will help.
Regards,
Naira


Yanqin Yang wrote:
> Hello,
>    
>   I  have four CHIP-on-chip datasets on affymetrix mouse promoter 1.0 R array, which are duplicate for both target protein and control group. By using makePlatformDesign and oligo packages, I have successfully read in the *.cel files. Now, I am stuck for the next step. Which package should I use for normalization and further statistic analysis? This is my first time dealing with CHIP-chip tiling array. Would anyone kindly help me out?
>    
>   Really appreciate your help!
>    
>   Yanqin  
>
>        
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Naira Naouar 

Tel:+32 (0)9 331 38 63                      
VIB Department of Plant Systems Biology, Ghent University
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