March 2006 Archives by author

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...

Starting: Wed Mar 1 05:26:54 CEST 2006
Ending: Fri Mar 31 23:01:24 CEST 2006
Messages: 443

• [BioC] Vector Size Too Large-error   Gaj Stan (BIGCAT)
• [BioC] Explaining limma, design matrices and linear models to non statisticians   Peter (BioConductor)
• [BioC] Quick start to linking GO terms and microarray data   michael watson (IAH-C)
• [BioC] Quick start to linking GO terms and microarray data   michael watson (IAH-C)
• [BioC] Quick start to linking GO terms and microarray data   michael watson (IAH-C)
• [BioC] Quick start to linking GO terms and microarray data   michael watson (IAH-C)
• [BioC] Limma and time-course data   michael watson (IAH-C)
• [BioC] Limma and time-course data   michael watson (IAH-C)
• [BioC] Limma and time-course data   michael watson (IAH-C)
• [BioC] Design matrix for simple time course   michael watson (IAH-C)
• [BioC] Design matrix for simple time course   michael watson (IAH-C)
• [BioC] How to search for coexpression?   michael watson (IAH-C)
• [BioC] M vs A plots of affymetrix data   michael watson (IAH-C)
• [BioC] M vs A plots of affymetrix data   michael watson (IAH-C)
• [BioC] M vs A plots of affymetrix data   michael watson (IAH-C)
• [BioC] Conversion of affymetrix annotation environment to matrix   michael watson (IAH-C)
• [BioC] KEGGSOAP   michael watson (IAH-C)
• [BioC] KEGGSOAP   michael watson (IAH-C)
• [BioC] KEGGSOAP   michael watson (IAH-C)
• [BioC] Inconsistent results returned from KEGG   michael watson (IAH-C)
• [BioC] Normalization   Naomi Altman
• [BioC] Limma and time-course data   Naomi Altman
• [BioC] Limma design matrix presentation   Naomi Altman
• [BioC] Limma and time-course data   Naomi Altman
• [BioC] Is it possible to fit a hierarchical linear model in LIMMA?   Naomi Altman
• [BioC] unwrapdups for duplicate spots on custom array   Naomi Altman
• [BioC] Fwd: Re: implementing limma with several sistematic effects   Naomi Altman
• [BioC] Fwd: Re: Scaling Factor for Affymetrix chips.   Naomi Altman
• [BioC] extracting significant genes using limma   Naomi Altman
• [BioC] extracting significant genes using limma   Naomi Altman
• [BioC] gcrma and signal detection p-values   Naomi Altman
• [BioC] Fwd: Re: How to Change labels to a print-tip boxplot ?   Naomi Altman
• [BioC] searchable archives   Naomi Altman
• [BioC] searchable archives   Naomi Altman
• [BioC] normalize.invariantset   Naomi Altman
• [BioC] Limma: background correction. Use or ignore?   Naomi Altman
• [BioC] Trying to find the expression summary values   Alvord, Greg (DMS) [Contr]
• [BioC] info su illumina   Lynn Amon
• [BioC] Bioconductor Digest, Vol 37, Issue 12   Lynn Amon
• [BioC] question about reading Affymetrix cel files   James Anderson
• [BioC] Affycoretools - Limit genes in Venn diagram by fold change?   Quentin Anstee
• [BioC] Affycoretools - Limit genes in Venn diagram by fold change?   Quentin Anstee
• [BioC] internet2.dll equivalent for Mac   Jonathan Arthur
• [BioC] PhD Position in Bioinformatics at the University Hospital Basel, Switzerland   Florent Baty
• [BioC] Wells number from .gpr   Henrik Bengtsson
• [BioC] R Package for retrieving sequence features   Charles C. Berry
• [BioC] searchable archives   Dick Beyer
• [BioC] AnnBuilder problem for mu11ksuba   Dick Beyer
• [BioC] AnnBuilder   Dick Beyer
• [BioC] AnnBuilder problem for mu11ksuba   Dick Beyer
• [BioC] MAS5 present/absent calls   Eric Blanc
• [BioC] RMAGEML: importMAGEOM returns nil pointer   Vincent Bloch
• [BioC] Design matrix for simple time course   Ben Bolstad
• [BioC] Limma and time-course data   Ben Bolstad
• [BioC] M vs A plots of affymetrix data   Ben Bolstad
• [BioC] M vs A plots of affymetrix data   Ben Bolstad
• [BioC] C entry point "ReadHeader" not in DLL for package "affy"   Ben Bolstad
• [BioC] Issues with BioC GO annotations and NetAffx   Bornman, Daniel M
• [BioC] Rgraphviz rendering   Bornman, Daniel M
• [BioC] Unable to get expression-values from cel-files of yeast   Roman Brunnemann
• [BioC] chicken annotation file to match CDF file   David Burt
• [BioC] chicken annotation file to match CDF file   David Burt
• [BioC] extracting significant genes using limma   Stefano Calza
• [BioC] JOB: Post-doctoral position in Genetic Statistics (Hamilton, Canada)   Angelo Canty
• [BioC] affy package and porcine arrays   David Carter
• [BioC] showcase (script)   Benilton Carvalho
• [BioC] GenePlotter - chr plots   Helen Cattan
• [BioC] grouping samples from distinct runs in limma   Edmund Chang
• [BioC] F-statistic in limma   Edmund Chang
• [BioC] globaltest on cDNA   Lang Chen
• [BioC] help on R/qtl   Lang Chen
• [BioC] International Workshop on Knowledge Systems in Bioinformatics (KSinBIT 2006)   Stijn Christiaens
• [BioC] Error with CDF environment when using combineAffyBatch of package matchprobes   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] Error with CDF environment when using combineAffyBatch of package matchprobes   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] Error with CDF environment when using combineAffyBatch of pac kage matchprobes - mas5   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] Does combineAffyBatch of package matchprobes eliminate the wrong probe sets?   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] Does combineAffyBatch of package matchprobes eliminate the wrong probe sets?   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] FW: Does combineAffyBatch of package matchprobes elimi nate the wrong probe sets?   Christian.Stratowa at vie.boehringer-ingelheim.com
• [BioC] Quick start to linking GO terms and microarray data   Giovanni Coppola
• [BioC] info su illumina   Giovanni Coppola
• [BioC] info su illumina   Giovanni Coppola
• [BioC] getBM (biomaRt) sometimes returns NULL   Giovanni Coppola
• [BioC] getBM (biomaRt) sometimes returns NULL   Giovanni Coppola
• [BioC] getBM (biomaRt) sometimes returns NULL   Giovanni Coppola
• [BioC] Biomart useDataset error   Aedin Culhane
• [BioC] Biomart useDataset error   Aedin Culhane
• [BioC] Affy Drosophila Tiling chips   Melissa Davis
• [BioC] Quick start to linking GO terms and microarray data   Sean Davis
• [BioC] Quick start to linking GO terms and microarray data   Sean Davis
• [BioC] Quick start to linking GO terms and microarray data   Sean Davis
• [BioC] info su illumina   Sean Davis
• [BioC] microarray and t.test   Sean Davis
• [BioC] Analysis for only 2 replicates   Sean Davis
• [BioC] Fine tuning heatmap.2 graphics   Sean Davis
• [BioC] Analysis for only 2 replicates   Sean Davis
• [BioC] More heatmap.2 graphics   Sean Davis
• [BioC] More heatmap.2 graphics   Sean Davis
• [BioC] .EXP files   Sean Davis
• [BioC] select one Affy probeset for one gene   Sean Davis
• [BioC] select one Affy probeset for one gene   Sean Davis
• [BioC] HEATMAP on LARGE DATA   Sean Davis
• [BioC] Time course....makeConstrasts()   Sean Davis
• [BioC] Normalization of 2 color Nimblegen array   Sean Davis
• [BioC] Normalization of 2 color Nimblegen array   Sean Davis
• [BioC] Linear models with different platforms   Sean Davis
• [BioC] AnnBuilder and GEO batch   Sean Davis
• [BioC] converting probe names to gene list   Sean Davis
• [BioC] KEGGSOAP   Sean Davis
• [BioC] All equal high p-values from limma topTable . What to do ? Need help...   Sean Davis
• [BioC] GenePlotter - chr plots   Sean Davis
• [BioC] [OT, slightly] GEO URL changes   Sean Davis
• [BioC] Heatmap.2 color scheme   Sean Davis
• [BioC] Calculating signal value implemented in Microarray Suite Version 5 using affy   Jenny Drnevich
• [BioC] How to boxplot Print tip group intensities with limma, out from marray objects ?   Jenny Drnevich
• [BioC] lost inherent methods of hist() for AffyBatch objects   Jenny Drnevich
• [BioC] Fwd: MAS5+32, PLIER+16 alorithms reported in affycomp   Frank Duan
• [BioC] Fwd: MAS5+32, PLIER+16 alorithms reported in affycomp   Frank Duan
• [BioC] info su illumina   Mark Dunning
• [BioC] info su illumina   Mark Dunning
• [BioC] RMAGEML: importMAGEOM returns nil pointer   Steffen Durinck
• [BioC] Quick start to linking GO terms and microarray data   Steffen Durinck
• [BioC] Quick start to linking GO terms and microarray data   Steffen Durinck
• [BioC] Quick start to linking GO terms and microarray data   Steffen Durinck
• [BioC] bioconductor version   D.Enrique ESCOBAR ESPINOZA
• [BioC] simpleAffy and bovinecdf   D.Enrique ESCOBAR ESPINOZA
• [BioC] simpleaffy problem with qc() applyed to an affybatch object from bovine   D.Enrique ESCOBAR ESPINOZA
• [BioC] New Quantian releases with almost all of CRAN / BioC   Dirk Eddelbuettel
• [BioC] affycomp and spikein: only 42 Spikein Genes   Mohammad Esad-Djou
• [BioC] SAM and siggenes: 4 questions   Mohammad Esad-Djou
• [BioC] bluefuse export and limma read.maimages   Eskeatnaf, M.A.
• [BioC] Normalization of 2 color Nimblegen array   Gustavo H. Esteves
• [BioC] R.fold values from sam and siggenes   Ettinger, Nicholas
• [BioC] Where is my glib-2.0.pc   Seth Falcon
• [BioC] Vector Size Too Large-error   Seth Falcon
• [BioC] Issues with BioC GO annotations and NetAffx   Seth Falcon
• [BioC] WebbioC for windows and other questions   Seth Falcon
• [BioC] all BioC 1.7   Seth Falcon
• [BioC] WebbioC for windows and other questions   Seth Falcon
• [BioC] bioconductor version   Seth Falcon
• [BioC] Downtime for bioconductor.org on Friday 14:30-14:45 PST   Seth Falcon
• [BioC] AnnBuilder subscript out of bounds error   Seth Falcon
• [BioC] Fwd: Rgraphviz installation problem - redefinition - conflicting types   Seth Falcon
• [BioC] KEGGSOAP   Seth Falcon
• [BioC] KEGGSOAP   Seth Falcon
• [BioC] converting probe names to gene list   Seth Falcon
• [BioC] how format a microarray experiment in R?   Seth Falcon
• [BioC] S. Cerevisiae Annotations Hints ?   Seth Falcon
• [BioC] searchable archives   Seth Falcon
• [BioC] KEGGSOAP   Seth Falcon
• [BioC] searchable archives   Seth Falcon
• [BioC] KEGGSOAP   Seth Falcon
• [BioC] [R] front- end problem while using nnet and tune.nnet   Seth Falcon
• [BioC] Limma: Extract genes from decideTests result   John Fernandes
• [BioC] extracting interactions between members of the KEGG pathways   Jane Fridlyand
• [BioC] select one Affy probeset for one gene   Robert Gentleman
• [BioC] select one Affy probeset for one gene   Robert Gentleman
• [BioC] Linear models with different platforms   Robert Gentleman
• [BioC] extracting interactions between members of the KEGG pathways   Robert Gentleman
• [BioC] Another question about dye swap   Giorgi, Elena
• [BioC] Wells number from .gpr   Giulio Di Giovanni
• [BioC] How to boxplot Print tip group intensities with limma, out from marray objects ?   Giulio Di Giovanni
• [BioC] How to boxplot Print tip group intensities with limma, out from marra   Giulio Di Giovanni
• [BioC] How to Change labels to a print-tip boxplot ?   Giulio Di Giovanni
• [BioC] S. Cerevisiae Annotations Hints ?   Giulio Di Giovanni
• [BioC] All equal high p-values from limma topTable . What to do ? Need help...   Giulio Di Giovanni
• [BioC] All equal high p-values from limma topTable . What to do ?   Giulio Di Giovanni
• [BioC] select one Affy probeset for one gene   Glazko, Galina
• [BioC] select one Affy probeset for one gene   Glazko, Galina
• [BioC] about duplicated probe sets   Glazko, Galina
• [BioC] Scaling Factor for Affymetrix chips.   Darlene Goldstein
• [BioC] R Package for retrieving sequence features   Wuming Gong
• [BioC] C. elegans annotation   Jeff Habig
• [BioC] Limma Design Matrix: How many levels can each factor have?   Xia Han
• [BioC] affy package and porcine arrays   Kasper Daniel Hansen
• [BioC] microarray and t.test   Hassane, Duane
• [BioC] showcase (script)   Christos Hatzis
• [BioC] Ph.D Positions in Bioinformatics at Johannes Kepler University Linz, Austria   Birgit Hauer
• [BioC] Postdoc Position in Bioinformatics at Johannes Kepler University Linz, Austria   Birgit Hauer
• [BioC] Limma: Extract genes from decideTests result   He, Yiwen (NIH/CIT) [C]
• [BioC] siggenes error message about sam.plot2   He, Yiwen (NIH/CIT) [C]
• [BioC] siggenes error message about sam.plot2   He, Yiwen (NIH/CIT) [C]
• [BioC] siggenes error message about sam.plot2   He, Yiwen (NIH/CIT) [C]
• [BioC] MLInterfaces   Stephen Henderson
• [BioC] Multtest   Stephen Henderson
• [BioC] Is it possible to fit a hierarchical linear model in LIMMA?   pingzhao Hu
• [BioC] Is it possible to fit a hierarchical linear model in LIMMA?   pingzhao Hu
• [BioC] Quick start to linking GO terms and microarray data   Wolfgang Huber
• [BioC] Error with CDF environment when using combineAffyBatch of package matchprobes   Wolfgang Huber
• [BioC] Conversion of affymetrix annotation environment to matrix   Wolfgang Huber
• [BioC] FW: Does combineAffyBatch of package matchprobes eliminate the wrong probe sets?   Wolfgang Huber
• [BioC] extracting interactions between members of the KEGG pathways   Wolfgang Huber
• [BioC] showcase   Wolfgang Huber
• [BioC] getBM (biomaRt) sometimes returns NULL   Wolfgang Huber
• [BioC] getBM (biomaRt) sometimes returns NULL   Wolfgang Huber
• [BioC] getBM (biomaRt) sometimes returns NULL   Wolfgang Huber
• [BioC] UseMart not working   Wolfgang Huber
• [BioC] Fwd: MAS5+32, PLIER+16 alorithms reported in affycomp   Rafael A. Irizarry
• [BioC] Postdoc Position   Rafael A. Irizarry
• [BioC] Normalization of 2 color Nimblegen array   Rafael A. Irizarry
• [BioC] More heatmap.2 graphics   Al Ivens
• [BioC] More heatmap.2 graphics   Al Ivens
• [BioC] p values of significant genes in SAM   Saurin D. Jani
• [BioC] searchable archives   Saurin D. Jani
• [BioC] yeast2cdf qc.affy(unnormalised, ) I'm Sorry Error: - help,   Saurin D. Jani
• [BioC] WebbioC for windows and other questions   Narendra Kaushik
• [BioC] Rank Product   Nadine Ketchandji
• [BioC] Analysis for only 2 replicates   Khan, Sohail
• [BioC] Analysis for only 2 replicates   Khan, Sohail
• [BioC] Scaling Factor for Affymetrix chips.   Khan, Sohail
• [BioC] Time course....makeConstrasts()   Khan, Sohail
• [BioC] Time course....makeConstrasts()   Khan, Sohail
• [BioC] Time course....makeConstrasts()   Khan, Sohail
• [BioC] Normalization of 2 color Nimblegen array   Khan, Sohail
• [BioC] UV-Cross linking   Khan, Sohail
• [BioC] UV-Crosslinking   Khan, Sohail
• [BioC] GCRMA-Background   Khan, Sohail
• [BioC] GCRMA-Background   Khan, Sohail
• [BioC] C entry point "ReadHeader" not in DLL for package "affy"   Kimpel, Mark William
• [BioC] Heatmap.2 color scheme   Jeff Lande
• [BioC] Heatmap.2 color scheme   Jeff Lande
• [BioC] Multiple testing correction for SimpleAffy t-tests   Brian Lane
• [BioC] Envir. drosgenome1, GENENAME not defined?   Emmanuel Levy
• [BioC] KEGGSOAP   Nianhua Li
• [BioC] Fine tuning heatmap.2 graphics   Peter (BioConductor List)
• [BioC] .EXP files / GEO files   Peter (BioConductor List)
• [BioC] extracting interactions between members of the KEGG pathways   Peter (BioConductor List)
• [BioC] extracting interactions between members of the KEGG pathways   Peter (BioConductor List)
• [BioC] Fine tuning heatmap.2 graphics   Peter (RPy List)
• [BioC] R crashes on winXP with 2G memory   Hao Liu
• [BioC] Quick start to linking GO terms and microarray data   Ting-Yuan Liu
• [BioC] BioC annotations for mgug4122a   Ting-Yuan Liu
• [BioC] Arabidopsis annotation package   Ting-Yuan Liu
• [BioC] Arabidopsis annotation package   Ting-Yuan Liu
• [BioC] AnnBuilder subscript out of bounds error   Ting-Yuan Liu
• [BioC] hopach package for clustering   Ting-Yuan Liu
• [BioC] Envir. drosgenome1, GENENAME not defined?   Ting-Yuan Liu
• [BioC] AnnBuilder problem for mu11ksuba   Ting-Yuan Liu
• [BioC] Envir. drosgenome1, GENENAME not defined?   Ting-Yuan Liu
• [BioC] AnnBuilder   Ting-Yuan Liu
• [BioC] Build an Annotation with GO2ALLPROBES   Ting-Yuan Liu
• [BioC] C. elegans annotation   Ting-Yuan Liu
• [BioC] Error message from AnnBuilder   Ting-Yuan Liu
• [BioC] Error message from AnnBuilder   Ting-Yuan Liu
• [BioC] Error message from AnnBuilder   Ting-Yuan Liu
• [BioC] Analysis for only 2 replicates   Xuejun Liu
• [BioC] heatmap and hclust results   Antoine Lucas
• [BioC] HEATMAP on LARGE DATA   Antoine Lucas
• [BioC] tiled SNP help.   Matthew Lyon
• [BioC] .EXP files   LUIS F MENEZES
• [BioC] grouping samples from distinct runs in limma   James W. MacDonald
• [BioC] limma question   James W. MacDonald
• [BioC] Affycoretools - Limit genes in Venn diagram by fold change?   James W. MacDonald
• [BioC] Affycoretools - Limit genes in Venn diagram by fold change?   James W. MacDonald
• [BioC] Design matrix for simple time course   James W. MacDonald
• [BioC] Unable to get expression-values from cel-files of yeast   James W. MacDonald
• [BioC] Limma: Extract genes from decideTests result   James W. MacDonald
• [BioC] F-statistic in limma   James W. MacDonald
• [BioC] Fwd: MAS5+32, PLIER+16 alorithms reported in affycomp   James W. MacDonald
• [BioC] Multiple testing correction for SimpleAffy t-tests   James W. MacDonald
• [BioC] Error with CDF environment when using combineAffyBatch of package matchprobes   James W. MacDonald
• [BioC] Affy Drosophila Tiling chips   James W. MacDonald
• [BioC] question about reading Affymetrix cel files   James W. MacDonald
• [BioC] Analysis for only 2 replicates   James W. MacDonald
• [BioC] M vs A plots of affymetrix data   James W. MacDonald
• [BioC] [R] Problem using GOstats package in R 2.2.1   James W. MacDonald
• [BioC] Package installation problem...   James W. MacDonald
• [BioC] select one Affy probeset for one gene   James W. MacDonald
• [BioC] globaltest on cDNA   James W. MacDonald
• [BioC] all BioC 1.7   James W. MacDonald
• [BioC] globaltest on cDNA   James W. MacDonald
• [BioC] extracting significant genes using limma   James W. MacDonald
• [BioC] Limma Design Matrix: How many levels can each factor have?   James W. MacDonald
• [BioC] Time course....makeConstrasts()   James W. MacDonald
• [BioC] about duplicated probe sets   James W. MacDonald
• [BioC] chicken annotation file to match CDF file   James W. MacDonald
• [BioC] showcase (script)   James W. MacDonald
• [BioC] annotation   James W. MacDonald
• [BioC] valcano plot x-values   James W. MacDonald
• [BioC] Trying to find the expression summary values   James W. MacDonald
• [BioC] valcano plot x-values   James W. MacDonald
• [BioC] adjPval and qvalue   James W. MacDonald
• [BioC] valcano plot x-values   James W. MacDonald
• [BioC] KEGGSOAP   James W. MacDonald
• [BioC] All equal high p-values from limma topTable . What to do ? Need help...   James W. MacDonald
• [BioC] Envir. drosgenome1, GENENAME not defined?   James W. MacDonald
• [BioC] simpleaffy problem with qc() applyed to an affybatch object from bovine   James W. MacDonald
• [BioC] normalize.invariantset   James W. MacDonald
• [BioC] normalize.invariantset   James W. MacDonald
• [BioC] RMA analysis with new Poplar chip from Affymetrix   James W. MacDonald
• [BioC] UV-Crosslinking   James W. MacDonald
• [BioC] magnifying genenames in pamr.plotcen()   James W. MacDonald
• [BioC] Help with annotation packages   James W. MacDonald
• [BioC] (no subject)   James W. MacDonald
• [BioC] Need a link to detailed description of Medianpolish !!   James W. MacDonald
• [BioC] UseMart not working   James W. MacDonald
• [BioC] UseMart not working   James W. MacDonald
• [BioC] Limma: background correction. Use or ignore?   James W. MacDonald
• [BioC] KEGGSOAP   Dr. Mayhaus Manuel
• [BioC] KEGGSOAP   Dr.Mayhaus Manuel
• [BioC] annotation   Morten Mattingsdal
• [BioC] searchable archives   Morten Mattingsdal
• [BioC] Limma design matrix presentation   Amy Mikhail
• [BioC] Limma design matrix presentation   Amy Mikhail
• [BioC] Help with annotation packages   Amy Mikhail
• [BioC] Help with annotation packages   Amy Mikhail
• [BioC] UseMart not working   Amy Mikhail
• [BioC] UseMart not working   Amy Mikhail
• [BioC] UseMart not working   Amy Mikhail
• [BioC] help on R/qtl   Martin Morgan
• [BioC] LIMMA: choice of offset value for background correction method "normexp"   Pie Muller
• [BioC] pamr package - problem with pamr.cv() function   Vincent Negre
• [BioC] unwrapdups for duplicate spots on custom array   Steffen Neumann
• [BioC] unwrapdups for duplicate spots on custom array   Steffen Neumann
• [BioC] Technical Replicates in limmaGUI   Heather Nyce
• [BioC] globaltest on cDNA   Oosting, J. (PATH)
• [BioC] Another question about dye swap   Ron Ophir
• [BioC] magnifying genenames in pamr.plotcen()   Benjamin Otto
• [BioC] Scaling Factor for Affymetrix chips   Jacky Pallas
• [BioC] gcrma and signal detection p-values   Triantafyllos Paparountas
• [BioC] AnnBuilder   Paola Pedotti
• [BioC] no connection to biol   Francois Pepin
• [BioC] BioC annotations for mgug4122a   Francois Pepin
• [BioC] [Fwd: BioC annotations for mgug4122a]   Francois Pepin
• [BioC] automating makeContrasts call in limma   Francois Pepin
• [BioC] automating makeContrasts call in limm   Francois Pepin
• [BioC] automating makeContrasts call in limm   Francois Pepin
• [BioC] [Fwd: Re: automating makeContrasts call in limm]   Francois Pepin
• [BioC] automating makeContrasts call in limm   Francois Pepin
• [BioC] normalize.invariantset   Daniel Pick
• [BioC] normalize.invariantset   Daniel Pick
• [BioC] Fine tuning heatmap.2 graphics   Alexander Ploner
• [BioC] RMA analysis with new Poplar chip from Affymetrix   Cathy Provencher
• [BioC] MLInterfaces   Qi.Zhang at astrazeneca.com
• [BioC] searchable archives   Adaikalavan Ramasamy
• [BioC] High-Throughput Data Analysis Course Announcement: Cold Spring Harbor Labs - June 14-27   Reimers, Mark (NIH/NCI) [E]
• [BioC] implementing limma with several sistematic effects   Pedro López Romero
• [BioC] using limma with no replicates   Pedro López Romero
• [BioC] (no subject)   Marie-Paule Roth
• [BioC] microarray and t.test   Roth, Richard
• [BioC] Multtest   Roth, Richard
• [BioC] How to search for coexpression?   David Ruau
• [BioC] Need a link to detailed description of Medianpolish !!   Sebastian Różewicz
• [BioC] March 15th deadline for European Conf on Computational Biology   Hershel Safer
• [BioC] Fine tuning heatmap.2 graphics   Marc Saric
• [BioC] Fine tuning heatmap.2 graphics   Marc Saric
• [BioC] object ".qcEnv" not found   Lana Schaffer
• [BioC] What happened to the searchable archive?   Lana Schaffer
• [BioC] MEEBO-tool in arrayQuality   Anja Schiel
• [BioC] p values of significant genes in SAM   Holger Schwender
• [BioC] siggenes error message about sam.plot2   Holger Schwender
• [BioC] siggenes error message about sam.plot2   Holger Schwender
• [BioC] SAM and siggenes: 4 questions   Holger Schwender
• [BioC] Where is my glib-2.0.pc   Jiantao Shi
• [BioC] Always get the opposite result when using Sigpathway.   Jiantao Shi
• [BioC] Fwd: Rgraphviz installation problem - redefinition - conflicting types   Nicolas Simonis
• [BioC] Fwd: Rgraphviz installation problem - redefinition         -       conflicting types   Nicolas Simonis
• [BioC] coerce aafTable object into dataframe (annaffy)   Colin A. Smith
• [BioC] WebbioC for windows and other questions   Colin A. Smith
• [BioC] Limma and time-course data   Gordon Smyth
• [BioC] Limma and time-course data   Gordon Smyth
• [BioC] bluefuse export and limma read.maimages   Gordon Smyth
• [BioC] automating makeContrasts call in limm   Gordon Smyth
• [BioC] imagene and limma   Gordon Smyth
• [BioC] imagene and limma   Gordon Smyth
• [BioC] Another question about dye swap   Gordon K Smyth
• [BioC] Limma and time-course data   Gordon K Smyth
• [BioC] Another question about dye swap   Gordon K Smyth
• [BioC] Limma missing values   Gordon K Smyth
• [BioC] bluefuse export and limma read.maimages   Gordon K Smyth
• [BioC] automating makeContrasts call in limm   Gordon K Smyth
• [BioC] searchable archives (why not google?)   Gordon K Smyth
• [BioC] Analysis starting from MAS 5.0 txt files   Maurizio Stefani
• [BioC] comparing cDNA and oligo array outcomes   Kathryn V. Steiger
• [BioC] limma question   Sun, Yezhou
• [BioC] bioconductor version   Ido M. Tamir
• [BioC] globaltest on cDNA   Gerhard Thallinger
• [BioC] globaltest on cDNA   Gerhard Thallinger
• [BioC] Explaining limma, design matrices and linear models to non statisticians   Natalie P. Thorne
• [BioC] Limma design matrix presentation   Natalie P. Thorne
• [BioC] Problems with mas5calls for ygs98 chips   Jarno Tuimala
• [BioC] imagene and limma   Sevin Turcan
• [BioC] imagene and limma   Sevin Turcan
• [BioC] SNP array packages   Natalie Twine
• [BioC] How to search for coexpression?   Björn Usadel
• [BioC] Analysis starting from MAS 5.0 txt files   Björn Usadel
• [BioC] All equal high p-values from limma topTable . What to do ? Need help...   Björn Usadel
• [BioC] Obtaining values like those from .exp files   Ruppert Valentino
• [BioC] Calculating signal value implemented in Microarray Suite Version 5 using affy   Ruppert Valentino
• [BioC] AnnBuilder   Hua Weng
• [BioC] AnnBuilder   Hua Weng
• [BioC] Error message from AnnBuilder   Hua Weng
• [BioC] Error message from AnnBuilder   Hua Weng
• [BioC] Error message from AnnBuilder   Hua Weng
• [BioC] Fine tuning heatmap.2 graphics   Wittner, Ben, Ph.D.
• [BioC] showcase (script)   Wittner, Ben, Ph.D.
• [BioC] SNP array packages   Wittner, Ben, Ph.D.
• [BioC] GCRMA-Background   Zhijin (Jean) Wu
• [BioC] annotation package for affymetrix Ecoli chip - ecoliasv2   Yanqin Yang
• [BioC] hopach package for clustering   Yanqin Yang
• [BioC] p values of significant genes in SAM   Assa Yeroslaviz
• [BioC] extracting significant genes using limma   Assa Yeroslaviz
• [BioC] extracting significant genes using limma   Assa Yeroslaviz
• [BioC] [Fwd: BioC annotations for mgug4122a]   John Zhang
• [BioC] KEGGSOAP   John Zhang
• [BioC] normalize.invariantset   lgautier at altern.org
• [BioC] need help in tune.nnet   madhurima bhattacharjee
• [BioC] front- end problem while using nnet and tune.nnet   madhurima bhattacharjee
• [BioC] HEATMAP on LARGE DATA   jon butchar
• [BioC] Build an Annotation with GO2ALLPROBES   ross.chapman at dpi.vic.gov.au
• [BioC] Help with annotation packages   sdurinck at ebi.ac.uk
• [BioC] about low B values and inconsistent experiments: array quality issues?   J.delasHeras at ed.ac.uk
• [BioC] Limma: background correction. Use or ignore?   J.delasHeras at ed.ac.uk
• [BioC] power calculation   kfbargad at ehu.es
• [BioC] goCluster results   kfbargad at ehu.es
• [BioC] annotation   marco fabbri
• [BioC] Rank Product   fhong at salk.edu
• [BioC] Analysis for only 2 replicates   fhong at salk.edu
• [BioC] Analysis for only 2 replicates   fhong at salk.edu
• [BioC] Arabidopsis annotation package   fhong at salk.edu
• [BioC] Arabidopsis annotation package   fhong at salk.edu
• [BioC] Linear models with different platforms   fhong at salk.edu
• [BioC] all BioC 1.7   kirk hammet
• [BioC] internet2.dll equivalent for Mac   stefano iacus
• [BioC] Package installation problem...   kannaiah at bsd.uchicago.edu
• [BioC] Limma missing values   kfbargad at ehu.es
• [BioC] heatmap and hclust results   kfbargad at ehu.es
• [BioC] (no subject)   lgautier at altern.org
• [BioC] AnnBuilder and GEO batch   claudio.is at libero.it
• [BioC] extracting interactions between members of the KEGG pathways   lilong at isb-sib.ch
• [BioC] problem with the CoCiteStats and mouseLLMappings libraries   mattia
• [BioC] bluefuse export and limma read.maimages   mls40 at cam.ac.uk
• [BioC] AnnBuilder subscript out of bounds error   ross.chapman at dpi.vic.gov.au
• [BioC] valcano plot x-values   sabrina.shao
• [BioC] valcano plot x-values   sabrina.shao
• [BioC] adjPval and qvalue   sabrina.shao
• [BioC] HEATMAP on LARGE DATA   mark salsburg
• [BioC] converting probe names to gene list   mark salsburg
• [BioC] Biomart useDataset error   sdurinck at ebi.ac.uk
• [BioC] How to search for coexpression?   stueber at mpiz-koeln.mpg.de
• [BioC] showcase (script)   toxygen
• [BioC] showcase (script)   toxygen
• [BioC] showcase (script)   toxygen
• [BioC] how format a microarray experiment in R?   gregory voisin

Last message date: Fri Mar 31 23:01:24 CEST 2006
Archived on: Fri Mar 31 23:01:38 CEST 2006

• Messages sorted by: [ thread ] [ subject ] [ date ]
• More info on this list...