[BioC] Affy Drosophila Tiling chips

[James W. MacDonald]

Melissa Davis wrote:
> Hello,
> I would like to use the AffyGUI package to analyze data from new (not yet 
> released) whole genome tiling arrays from Affy... how can I manually upload 
> these library (CDF) and annotation (BDMP) files? 

You won't be able to use AffyGUI for this chip type, as the affy package 
doesn't support the tiling arrays. You might look at tilingArray which 
is designed for analyzing the tiling chips.

HTH,

Jim


Or is it possible for them
> to be uploaded to the bioconductor database?
> 
> Thanks,
> Melissa
> 
> (Please note: my email address is changing to melissa.b.davis at gmail.com in 
> the coming months; final on July 1)
> Melissa B. Davis, PhD
> Postdoctoral Fellow
> Yale University School of Medicine
> Department of Genetics
> 333 Cedar St. NSB389
> New Haven, CT 06511
> (203) 785-6259 (lab)
> (203) 785-7227 (Fax)
> http://genome.med.yale.edu/lab/index.htm
> 
> 	[[alternative HTML version deleted]]
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623