[BioC] magnifying genenames in pamr.plotcen()

Benjamin Otto b.otto at uke.uni-hamburg.de
Tue Mar 28 13:28:07 CEST 2006


Hi,

plotting the centroids of three parameters with pamr.plotcen() results in
tiny "genenames" that can hardly be read and a really weird space
consumption in the plot. It looks about that:

+------------------------------+
|                              |
|                              |
|                              |
|        J          N          |
|                              |
|                              |
|                              |
|                              |
|   xxx +-----     ---+        |
|       |             |        |
|   xxx +---        --+        |
|       |             |        |
|   xxx +--          -+        |
+------------------------------+

There would be enough space for the lower part of the plot (the one
containing the centroids and genenames) to be stretched vertically much
more. Then the genenames font could be even bigger and more readable. I had
a look at the function header of pamr.plotcen() but unfortunately there is
no corresponding argument. Is there anyway to get the function plot that
thing in a more reasonable fashion?

regards

Benjamin



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