[BioC] Analysis for only 2 replicates

[Sean Davis]

On 3/9/06 8:14 AM, "Khan, Sohail" <khan at cshl.edu> wrote:

> Thanks everyone for your advice.  I have decided to use Limma, however I am
> not sure how to set up the design matrix for this analysis. Thanks again for
> your help..

Sohail,

You will probably need to read the appropriate sections of the limma User
guide.  There is a section called "Two Groups: Affymetrix", which would seem
to fit the bill here if I remember your design correctly.  If you have
problems, just show the code you are using and where things went wrong.

Sean