[BioC] affy package and porcine arrays

[Kasper Daniel Hansen]

On Mar 30, 2006, at 3:21 PM, David Carter wrote:

> Hello,
> I am getting some errors using the affy library with porcine arrays:
> Error in getCdfInfo(object) : Could not obtain CDF environment,  
> problems
> encountered:
> Specified environment specified did not contain Porcine
> Library - package porcinecdf not installed
> Data for package affy did not contain Porcine
> Bioconductor - porcinecdf not available
> In addition: Warning message:
> Failed to read replisting at
> http://www.bioconductor.org/repository/devel/package/Win32 in:
> getReplisting(repURL, repFile, method = method)
>
> I am using R version 2.0.1.  How do I get the porcine CDF installed?

That is really old. You should update, espcially because newer  
version of affy/Bioconductor will not work with R this old.

Anyway, try
   source("http://www.bioconductor.org/biocLite.R")
   biocLite("porcinecdf")

/Kasper



>
> -- 
> David Carter
> London Regional Genomics Centre
> Robarts Research Institute, Room 4.01
> PO Box 5015, 100 Perth Drive
> London, Ontario, Canada, N6A 5K8
>
> phone:	(519) 663-3253
> fax:	(519) 663-3037
>
> dcarter at robarts.ca
> http://www.lrgc.ca
>
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at stat.math.ethz.ch
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives: http://news.gmane.org/ 
> gmane.science.biology.informatics.conductor