[BioC] AnnBuilder

[Paola Pedotti]

Hello,
I am having problems running AnnBuilder under Linux.
My script is 

"ABPkgBuilder(baseName="ids.txt",   
                      baseMapType = "ug" , 
                      pkgName = "test210306",
                      pkgPath = "~/Desktop/poppy/pb.comparison/sigmamouse", 
                      organism ="Mus musculus", 
                      version ="1.1.0", 
                      author = list(author = "Paola Pedotti", 
                      maintener ="Paola Pedotti <p.pedotti at lumc.nl>")
                       ) "
                       
I've got a lot of warning on the connection with kegg, but as far as I know this is "normal".
So, the command run and takes a while. after that, it seems that the ABPkgBuilder works and finishes
(the following is the last row of the command
"[1] "3820 2 2") but it did not create the annotation package and the R doesn't have the prompt anymore.
from the list of ongoing processes under linux it seems that 
the problem is the connection with the EBI site: 
the connection has been established but there was problems on the 
ftp of .....ipi.MOUSE.dat.gz.
So R completely stuck and I have to kill the program to go on. 

I ran the command every day in this week so I don't think it's a problem of unavailability
of the site. 
thanks for you support

Paola