[BioC] Arabidopsis annotation package

[fhong@salk.edu]

Hi Ting-Yuan,

Thank you for your reply.

>
> The package ath1121501 (version 1.10.0) is built by the public data we
> collected on September 29, 2005.  Any updated information on the data
> website after September 29, 2005 would not be included in the package
> ath1121501 (version 1.10.0).
What public data you collected? Cause I search for gene At1g04100
(264328_at)at NCBI website, the pubmed IDs associated with this gene were
all published before 2004 and two of them were published before 2000. I
think NCBI have these information before September 29, 2005. So I am
little confused why package ath1121501 doesn't contain them?




> The package ath1121501 (version 1.11.0) is also built by the 2005-09-25
> data.  The primary reason we re-built these packages (version 1.11.0) is
> to reflect the modification of "environment" data structure in R
> developmental version.  The information are the same between version
> 1.10.0 and 1.11.0 of the package ath1121501.  The coming BioConductor 1.8
> release will update the meta data packages (version 1.12.0).
Will version 1.11 contain chromosome lenght which will enable us to use
geneplot package.


 Thank you very much!


 Bests,
 Fangxin



--------------------
Fangxin Hong  Ph.D.
Plant Biology Laboratory
The Salk Institute
10010 N. Torrey Pines Rd.
La Jolla, CA 92037
E-mail: fhong at salk.edu
(Phone): 858-453-4100 ext 1105