[BioC] KEGGSOAP

Dr. Mayhaus Manuel manuel.mayhaus at unimib.it
Mon Mar 20 17:09:09 CET 2006


Hi Folks,

I used to have a working KEGGSOAP installation - with RCurl, SSOAP,  
XML at their proper place...I remember that istallation was a bit  
tricky.
Now I try to reuse some code and it doesn't work anymore.
Even trying the example from the help doesn' t work

>> url <- mark.pathway.by.objects("path:eco00260",  c("eco:b0002",  
>> "eco:c00263"))
> Error in .SOAP(KEGGserver, "mark_pathway_by_objects", .soapArgs =
> list(pathway_id = pathway.id,  : Error occurred in the HTTP  
> request: Failed
> to access class (SOAP::KEGG): Can't locate File/Basename.pm in @INC  
> (@INC
> contains: /usr/local/WWW/pub/kegg/soap/cgi-bin
> /usr/local/WWW/cgi/kegg/ligand-bin/PACKAGE
> /usr/local/WWW/cgi/kegg/ligand-bin/DBIF
> /usr/local/WWW/cgi/kegg/ssdb-bin/package/GFIT_DBIF
> /usr/local/WWW/cgi/kegg/ssdb-bin/package/SS_DBIF
> /usr/local/WWW/pub/kegg/soap) at /usr/local/WWW/pub/kegg/soap/SOAP/ 
> KEGG.pm
> line 14. BEGIN failed--compilation aborted at
> /usr/local/WWW/pub/kegg/soap/SOAP/KEGG.pm line 14. Compilation  
> failed in
> require at (eval 89) line 3.

I'am quite sure it used to work - any ideas ?
Thanks

Manuel Mayhaus
Genopolis Consortium
(+39) 02 6448 3530
http://www.genopolis.it



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