[BioC] KEGGSOAP

[James W. MacDonald]

Hi Mick,

michael watson (IAH-C) wrote:
> Hi Seth
> 
> Is it possible to get the zip file for SSOAP for windows rather than
> use biocLite?  Some people I want to give access to don't have access
> to the internet.  I looked on bioconductor.org and couldn't find the
> zip file ....

When you use biocLite, you also get the zip file - note the second to 
last line in this R session:

 > source("http://www.bioconductor.org/biocLite.R")
 > biocLite("SSOAP")

Running bioCLite version 0.1  with R version  2.3.0

Running biocinstall version 1.3  with R version  2.3.0
trying URL 
'http://www.bioconductor.org/packages/omegahat/1.8/bin/windows/contrib/2.3/SSOAP_0.2-2.zip'
Content type 'application/zip' length 209039 bytes
opened URL
downloaded 204Kb

package 'SSOAP' successfully unpacked and MD5 sums checked

The downloaded packages are in
         C:\WINDOWS\Temp\RtmpG4dwpb\downloaded_packages
updating HTML package descriptions

Also note that this file will be removed when you quit R, so you have to 
retrieve it first.

Best,

Jim



> 
> Mick
> 
> ________________________________
> 
> From: bioconductor-bounces at stat.math.ethz.ch on behalf of Seth Falcon
>  Sent: Tue 21/03/2006 2:05 PM To: bioconductor at stat.math.ethz.ch 
> Subject: Re: [BioC] KEGGSOAP
> 
> 
> 
> "michael watson (IAH-C)" <michael.watson at bbsrc.ac.uk> writes:
> 
>> I have been trying to repeat the steps in this thread on Windows,
>> but I can't find the SSOAP package for windows.  Is it available?
> 
> 
> We have it in the Bioconductor package repositories.  Please try:
> 
> source("http://bioconductor.org/biocLite.R") biocLite("KEGGSOAP")
> 
> or, if you just want SSOAP, biocLite("SSOAP")
> 
> + seth
> 
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-- 
James W. MacDonald, M.S.
Biostatistician
Affymetrix and cDNA Microarray Core
University of Michigan Cancer Center
1500 E. Medical Center Drive
7410 CCGC
Ann Arbor MI 48109
734-647-5623


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