April 2015 Archives by author

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Starting: Wed Apr 1 10:19:10 CEST 2015
Ending: Thu Apr 30 19:50:54 CEST 2015
Messages: 222

• [Bioc-devel] Append/combine option for filterFastq and similar?   Aedin
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Arora, Sonali
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Arora, Sonali
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Arora, Sonali
• [Bioc-devel] Announcing a new package: GoogleGenomics   Siddhartha Bagaria
• [Bioc-devel] Use of confounders in downstream analysis   Aileen Bahl
• [Bioc-devel] Use of confounders in downstream analysis   Aileen Bahl
• [Bioc-devel] building R and bioconductor   Gabe Becker
• [Bioc-devel] building R and bioconductor   Gabe Becker
• [Bioc-devel] BioC 3.1 branch created   Henrik Bengtsson
• [Bioc-devel] BioC 3.1 branch created   Henrik Bengtsson
• [Bioc-devel] Dependency issue   Henrik Bengtsson
• [Bioc-devel] Dependency issue   Henrik Bengtsson
• [Bioc-devel] Biobase: Imports repeats Depends   Henrik Bengtsson
• [Bioc-devel] Bioc package pages: List also BugReports for a package?   Henrik Bengtsson
• [Bioc-devel] Bioc package pages: List also BugReports for a package?   Henrik Bengtsson
• [Bioc-devel] Biobase: Imports repeats Depends   Henrik Bengtsson
• [Bioc-devel] building R and bioconductor   Berri, Stefano
• [Bioc-devel] OpenMP on Mac OS "Mavericks" build server morelia   Ulrich Bodenhofer
• [Bioc-devel] OpenMP on Mac OS "Mavericks" build server morelia   Ulrich Bodenhofer
• [Bioc-devel] BrowserViz   Hector Corrada Bravo
• [Bioc-devel] AnnotationHub: ExpressionSetResource Error in Docker devel_core   Vincent Carey
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Vincent Carey
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Marc Carlson
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Marc Carlson
• [Bioc-devel] MafDb.ExAC.r0.3.sites missing from build   Robert Castelo
• [Bioc-devel] MafDb.ExAC.r0.3.sites missing from build   Robert Castelo
• [Bioc-devel] Short URLs for packages?   Robert Castelo
• [Bioc-devel] request for more notices about build issues   Sean Davis
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Sean Davis
• [Bioc-devel] Use of confounders in downstream analysis   Sean Davis
• [Bioc-devel] Just for fun   Sean Davis
• [Bioc-devel] R 3.3 for snow leopard   Nicolas Delhomme
• [Bioc-devel] seqnames as a candidate for BiocGenerics   Nicolas Delhomme
• [Bioc-devel] seqnames as a candidate for BiocGenerics   Nicolas Delhomme
• [Bioc-devel] building R and bioconductor   Laurent Gatto
• [Bioc-devel] AnnotationHub: Error in Docker release_core   Ludwig Geistlinger
• [Bioc-devel] AnnotationHub: Error in Docker release_core   Ludwig Geistlinger
• [Bioc-devel] AnnotationHub: ExpressionSetResource Error in Docker devel_core   Ludwig Geistlinger
• [Bioc-devel] AnnotationHub: ExpressionSetResource Error in Docker devel_core   Ludwig Geistlinger
• [Bioc-devel] AnnotationHub: ExpressionSetResource Error in Docker devel_core   Ludwig Geistlinger
• [Bioc-devel] Announcing a new package: regioneR   Bernat Gel
• [Bioc-devel] scanBam() segfault error   Leonard Goldstein
• [Bioc-devel] scanBam() segfault error   Leonard Goldstein
• [Bioc-devel] AnnotationHub: Error in Docker release_core   Elena Grassi
• [Bioc-devel] SummarizedExperiment subset of 4 dimensions   Jesper Gådin
• [Bioc-devel] SummarizedExperiment subset of 4 dimensions   Jesper Gådin
• [Bioc-devel] request for more notices about build issues   Kasper Daniel Hansen
• [Bioc-devel] Use of confounders in downstream analysis   Kasper Daniel Hansen
• [Bioc-devel] build error, piano package   Kasper Daniel Hansen
• [Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3   Peter Haverty
• [Bioc-devel] as.character method for GenomicRanges?   Peter Haverty
• [Bioc-devel] as.character method for GenomicRanges?   Peter Haverty
• [Bioc-devel] as.character method for GenomicRanges?   Peter Haverty
• [Bioc-devel] as.character method for GenomicRanges?   Peter Haverty
• [Bioc-devel] Fwd: Proposed biocViews for Hi-C assay   Nathaniel Hayden
• [Bioc-devel] Fwd: Proposed biocViews for Hi-C assay   Nathaniel Hayden
• [Bioc-devel] Append/combine option for filterFastq and similar?   Jim Hester
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Jim Hester
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Wolfgang Huber
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Wolfgang Huber
• [Bioc-devel] issue about S4 slot has a dist object.   Zhilong Jia
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Rainer Johannes
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Rainer Johannes
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Rainer Johannes
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Rainer Johannes
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Rainer Johannes
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Rainer Johannes
• [Bioc-devel] Suggestion: export function fetchChromLengthsFromEnsembl in GenomicFeatures   Rainer Johannes
• [Bioc-devel] SummarizedExperiment subset of 4 dimensions   Michael Lawrence
• [Bioc-devel] issue about S4 slot has a dist object.   Michael Lawrence
• [Bioc-devel] issue about S4 slot has a dist object.   Michael Lawrence
• [Bioc-devel] issue about S4 slot has a dist object.   Michael Lawrence
• [Bioc-devel] issue about S4 slot has a dist object.   Michael Lawrence
• [Bioc-devel] BrowserViz   Michael Lawrence
• [Bioc-devel] BrowserViz   Michael Lawrence
• [Bioc-devel] BrowserViz   Michael Lawrence
• [Bioc-devel] BrowserViz and sub-protocols   Michael Lawrence
• [Bioc-devel] BrowserViz and sub-protocols   Michael Lawrence
• [Bioc-devel] BrowserViz and sub-protocols   Michael Lawrence
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Michael Lawrence
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Michael Lawrence
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Michael Lawrence
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Michael Lawrence
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Michael Lawrence
• [Bioc-devel] mapping variadic calls to binary calls for dispatch   Michael Lawrence
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Michael Lawrence
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Michael Lawrence
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Michael Lawrence
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Michael Lawrence
• [Bioc-devel] as.character method for GenomicRanges?   Michael Lawrence
• [Bioc-devel] as.character method for GenomicRanges?   Michael Lawrence
• [Bioc-devel] as.character method for GenomicRanges?   Michael Lawrence
• [Bioc-devel] seqnames as a candidate for BiocGenerics   Michael Lawrence
• [Bioc-devel] as.character method for GenomicRanges?   Michael Lawrence
• [Bioc-devel] Update GSEABase to support new MSigDB collection in v5.0   Steve Lianoglou
• [Bioc-devel] Short URLs for packages?   Steve Lianoglou
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Philip Lijnzaad
• [Bioc-devel] namespace 'GenomeInfoDb' is not available   Chenglin Liu
• [Bioc-devel] Changes to the SummarizedExperiment Class   Michael Love
• [Bioc-devel] Changes to the SummarizedExperiment Class   Michael Love
• [Bioc-devel] SummarizedExperiment, differing assay dimnames   Michael Love
• [Bioc-devel] SummarizedExperiment, differing assay dimnames   Michael Love
• [Bioc-devel] Build error for DESeq2 dev causing error in other package builds   Michael Love
• [Bioc-devel] recalling methods   Michael Love
• [Bioc-devel] request for more notices about build issues   Michael Love
• [Bioc-devel] request for more notices about build issues   Michael Love
• [Bioc-devel] unsubcribe   Le Quan Ly
• [Bioc-devel] Warnings from ls() in AnnotationDbi   James W. MacDonald
• [Bioc-devel] New-package: bamsignals   Alessandro Mammana
• [Bioc-devel] New package: coMET   Martin, Tiphaine
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Martin, Tiphaine
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Martin, Tiphaine
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Martin, Tiphaine
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Martin, Tiphaine
• [Bioc-devel] BioC 3.1 branch created   Martin, Tiphaine
• [Bioc-devel] BioC 3.1 branch created   Martin, Tiphaine
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Thomas Maurel
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Thomas Maurel
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Thomas Maurel
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Thomas Maurel
• [Bioc-devel] SummarizedExperiment subset of 4 dimensions   Martin Morgan
• [Bioc-devel] SummarizedExperiment subset of 4 dimensions   Martin Morgan
• [Bioc-devel] Changes to the SummarizedExperiment Class   Martin Morgan
• [Bioc-devel] issue about S4 slot has a dist object.   Martin Morgan
• [Bioc-devel] Build error for DESeq2 dev causing error in other package builds   Martin Morgan
• [Bioc-devel] AnnotationHub: ExpressionSetResource Error in Docker devel_core   Martin Morgan
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Martin Morgan
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Martin Morgan
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Martin Morgan
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Martin Morgan
• [Bioc-devel] Update GSEABase to support new MSigDB collection in v5.0   Martin Morgan
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Martin Morgan
• [Bioc-devel] scanBam() segfault error   Martin Morgan
• [Bioc-devel] scanBam() segfault error   Martin Morgan
• [Bioc-devel] Append/combine option for filterFastq and similar?   Martin Morgan
• [Bioc-devel] Append/combine option for filterFastq and similar?   Martin Morgan
• [Bioc-devel] BioC 2015 Bioconductor Annual Conference   Martin Morgan
• [Bioc-devel] Warnings from ls() in AnnotationDbi   Martin Morgan
• [Bioc-devel] Biostring   Martin Morgan
• [Bioc-devel] building R and bioconductor   Martin Morgan
• [Bioc-devel] namespace 'GenomeInfoDb' is not available   Martin Morgan
• [Bioc-devel] Announcing a new package: R3CPET   Djekidel Mohamed Nadhir
• [Bioc-devel] Bioconductor Newsletter - April 2015   Valerie Obenchain
• [Bioc-devel] BioC 2015 Conference Posters   Valerie Obenchain
• [Bioc-devel] Changes to the SummarizedExperiment Class   Hervé Pagès
• [Bioc-devel] issue about S4 slot has a dist object.   Hervé Pagès
• [Bioc-devel] issue about S4 slot has a dist object.   Hervé Pagès
• [Bioc-devel] New package: coMET   Hervé Pagès
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Hervé Pagès
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Hervé Pagès
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Hervé Pagès
• [Bioc-devel] AnnotationHubData Error: Access denied: 530   Hervé Pagès
• [Bioc-devel] Suggestion: export function fetchChromLengthsFromEnsembl in GenomicFeatures   Hervé Pagès
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Hervé Pagès
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Hervé Pagès
• [Bioc-devel] coverage(gr, weight='score') does not work when score(gr) is an Rle   Hervé Pagès
• [Bioc-devel] Error on Windows when selecting a single chromosome from a BSgenome   Hervé Pagès
• [Bioc-devel] as.character method for GenomicRanges?   Hervé Pagès
• [Bioc-devel] as.character method for GenomicRanges?   Hervé Pagès
• [Bioc-devel] as.character method for GenomicRanges?   Hervé Pagès
• [Bioc-devel] as.character method for GenomicRanges?   Hervé Pagès
• [Bioc-devel] seqnames as a candidate for BiocGenerics   Hervé Pagès
• [Bioc-devel] as.character method for GenomicRanges?   Hervé Pagès
• [Bioc-devel] as.character method for GenomicRanges?   Hervé Pagès
• [Bioc-devel] Biobase: Imports repeats Depends   Hervé Pagès
• [Bioc-devel] 'memory not mapped' in trimLRpatterns   Hervé Pagès
• [Bioc-devel] Build error for DESeq2 dev causing error in other package builds   Andrea Rau
• [Bioc-devel] BioC 3.1 branch created   Kevin Rue-Albrecht
• [Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3   Sergei Ryazansky
• [Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3   Sergei Ryazansky
• [Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3   Sergei Ryazansky
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Bastian Schiffthaler
• [Bioc-devel] Announcing a new package: FlowRepositoryR   Josef Spidlen
• [Bioc-devel] 'memory not mapped' in trimLRpatterns   Michael Stadler
• [Bioc-devel] biocUpgrade Wrongly Infers R Version   Dario Strbenac
• [Bioc-devel] Updating package NEWS files for Bioconductor 3.1 release announcement (and biocViews)   Dan Tenenbaum
• [Bioc-devel] BrowserViz and sub-protocols   Dan Tenenbaum
• [Bioc-devel] request for more notices about build issues   Dan Tenenbaum
• [Bioc-devel] Disabling commits to release today; Update NEWS files, biocViews   Dan Tenenbaum
• [Bioc-devel] Warning message: multiple methods tables found for ‘score’   Dan Tenenbaum
• [Bioc-devel] MafDb.ExAC.r0.3.sites missing from build   Dan Tenenbaum
• [Bioc-devel] OpenMP on Mac OS "Mavericks" build server morelia   Dan Tenenbaum
• [Bioc-devel] OpenMP on Mac OS "Mavericks" build server morelia   Dan Tenenbaum
• [Bioc-devel] request for more notices about build issues   Dan Tenenbaum
• [Bioc-devel] Docker granularity: containers for individual R packages, running on a normal R installation?   Dan Tenenbaum
• [Bioc-devel] Important: Bioconductor 3.1 branch to be created today - do not commit during this time   Dan Tenenbaum
• [Bioc-devel] BioC 3.1 branch created   Dan Tenenbaum
• [Bioc-devel] BioC 3.1 branch created   Dan Tenenbaum
• [Bioc-devel] BioC 3.1 branch created   Dan Tenenbaum
• [Bioc-devel] R 3.3 for snow leopard   Dan Tenenbaum
• [Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3   Dan Tenenbaum
• [Bioc-devel] Bioconductor 3.1 is released!   Dan Tenenbaum
• [Bioc-devel] Error after upgrading to R 3.2.0 with loading of GO.db: 2 arguments passed to .Internal(ls) which requires 3   Dan Tenenbaum
• [Bioc-devel] Dependency issue   Dan Tenenbaum
• [Bioc-devel] R 3.3 for snow leopard   Dan Tenenbaum
• [Bioc-devel] R 3.3 for snow leopard   Dan Tenenbaum
• [Bioc-devel] today's devel build report   Dan Tenenbaum
• [Bioc-devel] build error, piano package   Dan Tenenbaum
• [Bioc-devel] Bioc package pages: List also BugReports for a package?   Dan Tenenbaum
• [Bioc-devel] biocUpgrade Wrongly Infers R Version   Dan Tenenbaum
• [Bioc-devel] Short URLs for packages?   Dan Tenenbaum
• [Bioc-devel] Short URLs for packages?   Dan Tenenbaum
• [Bioc-devel] Short URLs for packages?   Dan Tenenbaum
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Ryan Thompson
• [Bioc-devel] Append/combine option for filterFastq and similar?   Ryan C. Thompson
• [Bioc-devel] Append/combine option for filterFastq and similar?   Ryan C. Thompson
• [Bioc-devel] Append/combine option for filterFastq and similar?   Ryan C. Thompson
• [Bioc-devel] Interoperability between DataFrame and dplyr?   Ryan C. Thompson
• [Bioc-devel] BrowserViz and sub-protocols   Tim Triche, Jr.
• [Bioc-devel] BrowserViz and sub-protocols   Tim Triche, Jr.
• [Bioc-devel] BrowserViz and sub-protocols   Tim Triche, Jr.
• [Bioc-devel] BrowserViz: curious but needs a small tweak to run example   Leonardo Collado Torres
• [Bioc-devel] recalling methods   Leonardo Collado Torres
• [Bioc-devel] R 3.3 for snow leopard   Leonardo Collado Torres
• [Bioc-devel] R 3.3 for snow leopard   Leonardo Collado Torres
• [Bioc-devel] build error, piano package   Leif Väremo
• [Bioc-devel] Announcing a new package: ggtree   Yu, Guangchuang
• [Bioc-devel] Announcing a new package: DMRcaller   Radu Zabet
• [Bioc-devel] New package for copy number detection from targeted sequencing using off-target reads   t.kuilman at nki.nl
• [Bioc-devel] Dependency issue   t.kuilman at nki.nl
• [Bioc-devel] Biostring   a_kinga at yahoo.com

Last message date: Thu Apr 30 19:50:54 CEST 2015
Archived on: Thu Apr 30 19:51:19 CEST 2015

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