[Bioc-devel] MafDb.ExAC.r0.3.sites missing from build

[Dan Tenenbaum]

Robert, you just need to put MafDb.ExAC.r0.3.sites in Depends, Suggests, or Imports.

Dan


----- Original Message -----
> From: "Robert Castelo" <robert.castelo at upf.edu>
> To: bioc-devel at r-project.org
> Sent: Friday, April 10, 2015 2:33:04 PM
> Subject: [Bioc-devel] MafDb.ExAC.r0.3.sites missing from build
> 
> hi,
> 
> i have just noticed that VariantFiltering breaks in the last build:
> 
> http://www.bioconductor.org/checkResults/3.1/bioc-LATEST/VariantFiltering/zin2-buildsrc.html
> 
> and the reason is that the devel annotation package
> 
> http://www.bioconductor.org/packages/devel/data/annotation/html/MafDb.ExAC.r0.3.sites.html
> 
> seems not to be available on the build system during the vignette
> execution.
> 
> it's strange b/c its landing page shows that the package is there and
> other MafDb annotation packages are loaded by VariantFiltering during
> the vignette execution without problems.
> 
> just to ensure that this is solved for the release/NEWS deadline let
> me
> know if you think this is something that can be fixed on the build
> machine or you prefer that i update VariantFiltering so that it does
> not
> attempt to load this package during the vignette execution, and we
> sort
> out the problem after the release.
> 
> thanks!!
> 
> robert.
> 
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