[Bioc-devel] BioC 3.1 branch created

[Martin, Tiphaine]

Hi Dan,

When I try to access on my package, I have ³Internal Server Error². Maybe
I make a mistake somewhere.

https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/
coMET
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/coMET

Regards,
Tiphaine

On 17/04/2015 05:44, "Dan Tenenbaum" <dtenenba at fredhutch.org> wrote:

>
>
>----- Original Message -----
>> From: "Henrik Bengtsson" <henrik.bengtsson at ucsf.edu>
>> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
>> Cc: "bioc-devel" <bioc-devel at r-project.org>
>> Sent: Thursday, April 16, 2015 6:57:45 PM
>> Subject: Re: [Bioc-devel] BioC 3.1 branch created
>> 
>> On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum
>> <dtenenba at fredhutch.org> wrote:
>> > The BioC 3.1 branch is now ready.
>> >
>> > Remember, you always have access to 2 versions of your package:
>> > the "release" and the "devel" versions.
>> >
>> > Right now the "release" version of your package (which is not
>> > officially released yet but will be tomorrow if
>> > everything goes well) is in the 3.1 branch and accessible at:
>> >
>> > 
>>https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpack
>>s/<PKGNAME>
>> >
>> > Only bug fixes and documentation improvements should go here.
>> >
>> > As always the "devel" version of your package is at:
>> >
>> >  https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/<PKGNAME>
>> >
>> > Similarly for experiment packages, where your package is available
>> > in devel at
>> >
>> > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/<PKGNAME>
>> >
>> > The release branch of it is in:
>> >
>> > 
>>https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs
>>/<PKGNAME>
>> >
>> >
>> > Normal development of your package can now resume here.
>> >
>> > Please let us know if you have any questions.
>> 
>> Was the wrong version bump done for the GitHub-SVN bridges, because
>> the 'bioc-sync' commits show release version numbers and not devel
>> ones?!
>> 
>
>Not the wrong version bump, but it seems like the second one didn't come
>through. 
>
>Should be sorted now. Sorry for the inconvenience.
>
>Dan
>
>
>
>> For instance, the aroma.light GitHub repository (master branch),
>> which
>> should reflect the Bioc devel version, 'bioc-sync' made a commit
>> bumping the version from 1.39.5 to 1.40.0.  Note that this version is
>> the version for the Bioc release - not Bioc devel.  I would expect it
>> to be a bump to 1.41.0. Details:
>> 
>> 
>>https://github.com/HenrikBengtsson/affxparser/commit/ef10d93df696d018de3e
>>426bc6c2c1b8256a9b06
>> (1.40.0)
>> 
>>https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpack
>>s/affxparser/DESCRIPTION
>> (1.40.0)
>> 
>>https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser/DE
>>SCRIPTION
>> (1.41.0)
>> 
>> I've verified that the bridge is still to the Bioc devel SVN
>> (trunk/madman), because when I tweaked the Date in DESCRIPTION (with
>> the wrong Version field) and pushed to GitHub, that was reflected on
>> Bioc devel SVN  (trunk/madman).
>> 
>> I see the same for aroma.light as well:
>> 
>> 
>>https://github.com/HenrikBengtsson/aroma.light/commit/64b2bbef5b81baebc5d
>>a548110a0bf1c25d208e2
>> (2.4.0)
>> 
>>https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpack
>>s/aroma.light/DESCRIPTION
>> (2.4.0)
>> 
>>https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/aroma.light/D
>>ESCRIPTION
>> (2.5.0)
>> 
>> Holding back with pushes via GitHub until I resolved. Let me know if
>> this is a FAQ.
>> 
>> Thanks,
>> 
>> Henrik
>> 
>> >
>> >
>> > Thanks!
>> >
>> > Dan
>> >
>> > _______________________________________________
>> > Bioc-devel at r-project.org mailing list
>> > https://stat.ethz.ch/mailman/listinfo/bioc-devel
>>
>
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