[Bioc-devel] BioC 3.1 branch created

[Henrik Bengtsson]

On Apr 16, 2015 9:44 PM, "Dan Tenenbaum" <dtenenba at fredhutch.org> wrote:
>
>
>
> ----- Original Message -----
> > From: "Henrik Bengtsson" <henrik.bengtsson at ucsf.edu>
> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> > Cc: "bioc-devel" <bioc-devel at r-project.org>
> > Sent: Thursday, April 16, 2015 6:57:45 PM
> > Subject: Re: [Bioc-devel] BioC 3.1 branch created
> >
> > On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum
> > <dtenenba at fredhutch.org> wrote:
> > > The BioC 3.1 branch is now ready.
> > >
> > > Remember, you always have access to 2 versions of your package:
> > > the "release" and the "devel" versions.
> > >
> > > Right now the "release" version of your package (which is not
> > > officially released yet but will be tomorrow if
> > > everything goes well) is in the 3.1 branch and accessible at:
> > >
> > >
https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/
<PKGNAME>
> > >
> > > Only bug fixes and documentation improvements should go here.
> > >
> > > As always the "devel" version of your package is at:
> > >
> > >  https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/<PKGNAME>
> > >
> > > Similarly for experiment packages, where your package is available
> > > in devel at
> > >
> > > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/<PKGNAME>
> > >
> > > The release branch of it is in:
> > >
> > >
https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/
<PKGNAME>
> > >
> > >
> > > Normal development of your package can now resume here.
> > >
> > > Please let us know if you have any questions.
> >
> > Was the wrong version bump done for the GitHub-SVN bridges, because
> > the 'bioc-sync' commits show release version numbers and not devel
> > ones?!
> >
>
> Not the wrong version bump, but it seems like the second one didn't come
through.
>
> Should be sorted now. Sorry for the inconvenience.

Confirmed. And no worries. Thanks for your great work.

Henrik

>
> Dan
>
>
>
> > For instance, the aroma.light GitHub repository (master branch),
> > which
> > should reflect the Bioc devel version, 'bioc-sync' made a commit
> > bumping the version from 1.39.5 to 1.40.0.  Note that this version is
> > the version for the Bioc release - not Bioc devel.  I would expect it
> > to be a bump to 1.41.0. Details:
> >
> >
https://github.com/HenrikBengtsson/affxparser/commit/ef10d93df696d018de3e426bc6c2c1b8256a9b06
> > (1.40.0)
> >
https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/affxparser/DESCRIPTION
> > (1.40.0)
> >
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser/DESCRIPTION
> > (1.41.0)
> >
> > I've verified that the bridge is still to the Bioc devel SVN
> > (trunk/madman), because when I tweaked the Date in DESCRIPTION (with
> > the wrong Version field) and pushed to GitHub, that was reflected on
> > Bioc devel SVN  (trunk/madman).
> >
> > I see the same for aroma.light as well:
> >
> >
https://github.com/HenrikBengtsson/aroma.light/commit/64b2bbef5b81baebc5da548110a0bf1c25d208e2
> > (2.4.0)
> >
https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/aroma.light/DESCRIPTION
> > (2.4.0)
> >
https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/aroma.light/DESCRIPTION
> > (2.5.0)
> >
> > Holding back with pushes via GitHub until I resolved. Let me know if
> > this is a FAQ.
> >
> > Thanks,
> >
> > Henrik
> >
> > >
> > >
> > > Thanks!
> > >
> > > Dan
> > >
> > > _______________________________________________
> > > Bioc-devel at r-project.org mailing list
> > > https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >

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