[Bioc-devel] BioC 3.1 branch created

[Dan Tenenbaum]

----- Original Message -----
> From: "Henrik Bengtsson" <henrik.bengtsson at ucsf.edu>
> To: "Dan Tenenbaum" <dtenenba at fredhutch.org>
> Cc: "bioc-devel" <bioc-devel at r-project.org>
> Sent: Thursday, April 16, 2015 6:57:45 PM
> Subject: Re: [Bioc-devel] BioC 3.1 branch created
> 
> On Thu, Apr 16, 2015 at 1:23 PM, Dan Tenenbaum
> <dtenenba at fredhutch.org> wrote:
> > The BioC 3.1 branch is now ready.
> >
> > Remember, you always have access to 2 versions of your package:
> > the "release" and the "devel" versions.
> >
> > Right now the "release" version of your package (which is not
> > officially released yet but will be tomorrow if
> > everything goes well) is in the 3.1 branch and accessible at:
> >
> > https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/<PKGNAME>
> >
> > Only bug fixes and documentation improvements should go here.
> >
> > As always the "devel" version of your package is at:
> >
> >  https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/<PKGNAME>
> >
> > Similarly for experiment packages, where your package is available
> > in devel at
> >
> > https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/<PKGNAME>
> >
> > The release branch of it is in:
> >
> > https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_1/experiment/pkgs/<PKGNAME>
> >
> >
> > Normal development of your package can now resume here.
> >
> > Please let us know if you have any questions.
> 
> Was the wrong version bump done for the GitHub-SVN bridges, because
> the 'bioc-sync' commits show release version numbers and not devel
> ones?!
> 

Not the wrong version bump, but it seems like the second one didn't come through. 

Should be sorted now. Sorry for the inconvenience.

Dan



> For instance, the aroma.light GitHub repository (master branch),
> which
> should reflect the Bioc devel version, 'bioc-sync' made a commit
> bumping the version from 1.39.5 to 1.40.0.  Note that this version is
> the version for the Bioc release - not Bioc devel.  I would expect it
> to be a bump to 1.41.0. Details:
> 
> https://github.com/HenrikBengtsson/affxparser/commit/ef10d93df696d018de3e426bc6c2c1b8256a9b06
> (1.40.0)
> https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/affxparser/DESCRIPTION
> (1.40.0)
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/affxparser/DESCRIPTION
> (1.41.0)
> 
> I've verified that the bridge is still to the Bioc devel SVN
> (trunk/madman), because when I tweaked the Date in DESCRIPTION (with
> the wrong Version field) and pushed to GitHub, that was reflected on
> Bioc devel SVN  (trunk/madman).
> 
> I see the same for aroma.light as well:
> 
> https://github.com/HenrikBengtsson/aroma.light/commit/64b2bbef5b81baebc5da548110a0bf1c25d208e2
> (2.4.0)
> https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_1/madman/Rpacks/aroma.light/DESCRIPTION
> (2.4.0)
> https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/aroma.light/DESCRIPTION
> (2.5.0)
> 
> Holding back with pushes via GitHub until I resolved. Let me know if
> this is a FAQ.
> 
> Thanks,
> 
> Henrik
> 
> >
> >
> > Thanks!
> >
> > Dan
> >
> > _______________________________________________
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>