[Bioc-devel] AnnotationHubData Error: Access denied: 530

[Rainer Johannes]

dear all,

I have added a recipe to the AnnotationHubData to provide EnsDb classes (from my ensembldb package) based on GTF files from Ensembl. Now, after adding the recipe to the AnnotationHubData package and installing it (following the vignettes from the AnnotationHub and AnnotationHubData) I called

updateResources(AnnotationHubRoot=getWd(), BiocVersion=biocVersion(), preparerClasses="EnsemblGtfToEnsDbPreparer", insert=FALSE, metadataOnly=TRUE)

and got the output:

Ailuropoda_melanoleuca.ailMel1.78.gtf.gz
Anas_platyrhynchos.BGI_duck_1.0.78.gtf.gz
Anolis_carolinensis.AnoCar2.0.78.gtf.gz
Astyanax_mexicanus.AstMex102.78.gtf.gz
Bos_taurus.UMD3.1.78.gtf.gz
Caenorhabditis_elegans.WBcel235.78.gtf.gz
Callithrix_jacchus.C_jacchus3.2.1.78.gtf.gz
Canis_familiaris.CanFam3.1.78.gtf.gz
Cavia_porcellus.cavPor3.78.gtf.gz
Chlorocebus_sabaeus.ChlSab1.1.78.gtf.gz
Choloepus_hoffmanni.choHof1.78.gtf.gz
Ciona_intestinalis.KH.78.gtf.gz
Ciona_savignyi.CSAV2.0.78.gtf.gz
Danio_rerio.Zv9.78.gtf.gz
Dasypus_novemcinctus.Dasnov3.0.78.gtf.gz
Dipodomys_ordii.dipOrd1.78.gtf.gz
Drosophila_melanogaster.BDGP5.78.gtf.gz
Error in function (type, msg, asError = TRUE)  : Access denied: 530

I guess that must be related to the Ensembl ftp? Is anybody else experiencing this error?

cheers, jo


my session info:

> sessionInfo()
R Under development (unstable) (2015-03-04 r67940)
Platform: x86_64-apple-darwin14.3.0/x86_64 (64-bit)
Running under: OS X 10.10.3 (Yosemite)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  stats4    stats     graphics  grDevices utils     datasets 
[8] methods   base     

other attached packages:
[1] AnnotationHubData_0.0.205 futile.logger_1.4        
[3] AnnotationHub_1.99.81     GenomicRanges_1.19.52    
[5] GenomeInfoDb_1.3.16       IRanges_2.1.43           
[7] S4Vectors_0.5.22          BiocGenerics_0.13.11     

loaded via a namespace (and not attached):
 [1] Rcpp_0.11.5                  BiocInstaller_1.17.7        
 [3] XVector_0.7.4                futile.options_1.0.0        
 [5] GenomicFeatures_1.19.37      bitops_1.0-6                
 [7] tools_3.2.0                  zlibbioc_1.13.3             
 [9] biomaRt_2.23.5               digest_0.6.8                
[11] BSgenome_1.35.20             jsonlite_0.9.15             
[13] RSQLite_1.0.0                shiny_0.11.1                
[15] DBI_0.3.1                    rtracklayer_1.27.11         
[17] httr_0.6.1                   stringr_0.6.2               
[19] Biostrings_2.35.12           Biobase_2.27.3              
[21] R6_2.0.1                     AnnotationDbi_1.29.21       
[23] XML_3.98-1.1                 BiocParallel_1.1.24         
[25] RJSONIO_1.3-0                ensembldb_0.99.15           
[27] lambda.r_1.1.7               Rsamtools_1.19.50           
[29] htmltools_0.2.6              GenomicAlignments_1.3.34    
[31] AnnotationForge_1.9.7        mime_0.3                    
[33] interactiveDisplayBase_1.5.6 xtable_1.7-4                
[35] httpuv_1.3.2                 RCurl_1.95-4.5              
[37] VariantAnnotation_1.13.47