[Bioc-devel] Append/combine option for filterFastq and similar?
james.f.hester at gmail.com
Wed Apr 22 19:28:04 CEST 2015
I typically use pipe() in these circumstances which avoids using any
readLines(pipe("cat file1 file2"))
It should work with filterFastq assuming it can read from connections
rather than just files, but I have not tested it to be sure.
On Wed, Apr 22, 2015 at 1:16 PM, Ryan C. Thompson <rct at thompsonclan.org>
> That's not ideal because it's duplicating storage unnecessarily.
> On 04/22/2015 04:07 AM, Aedin wrote:
>> This is one instance were a system or simple unix command is very easy
>> system('cat *.fastq > all.fastq')
>> On Apr 22, 2015, at 6:00, bioc-devel-request at r-project.org wrote:
>>> Re: Append/combine option for filterFastq and similar?
>> Bioc-devel at r-project.org mailing list
> Bioc-devel at r-project.org mailing list
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