[Bioc-devel] AnnotationHub: Error in Docker release_core

Ludwig Geistlinger Ludwig.Geistlinger at bio.ifi.lmu.de
Thu Apr 9 10:57:59 CEST 2015

Dear Elena,

thank you for your quick response.
Seems as I have make this up to early - it works now for me as well, must
have been a pure connection issue.

Thx for pointing me to the docker scripts (I must have overread it, is ac
tually also stated under http://bioconductor.org/help/docker/).

Sorry for the inconvenience!!


> Hi,
> On Thu, Apr 9, 2015 at 10:27 AM, Ludwig Geistlinger
> <Ludwig.Geistlinger at bio.ifi.lmu.de> wrote:
>> Error in file(con, "r") : cannot open the connection
>> In addition: Warning message:
>> In file(con, "r") : unable to resolve 'annotationhub.bioconductor.org'
> That's strange, on linux it's working. Seems related to network
> unavailability inside Docker with Mac OS X (I know, not a very
> insightful suggestion...).
>> BTW: are the docker scripts that were used to create the bioc dockers
>> under
>> http://www.bioconductor.org/help/docker/
>> somewhere available?
> https://github.com/Bioconductor/bioc_docker
> E.

Dipl.-Bioinf. Ludwig Geistlinger

Lehr- und Forschungseinheit für Bioinformatik
Institut für Informatik
Ludwig-Maximilians-Universität München
Amalienstrasse 17, 2. Stock, Büro A201
80333 München

Tel.: 089-2180-4067
eMail: Ludwig.Geistlinger at bio.ifi.lmu.de

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