[Bioc-devel] AnnotationHub: Error in Docker release_core
Ludwig Geistlinger
Ludwig.Geistlinger at bio.ifi.lmu.de
Thu Apr 9 10:27:12 CEST 2015
Hi,
I just started to toy around with the new BioC dockers out of curiosity.
As I pulled down the release_core image (running boot2docker under OS X
Yosemite)
docker run -ti bioconductor/release_core R
and then executed
> library(AnnotationHub)
> hub <- AnnotationHub()
I received the following error:
Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") : unable to resolve 'annotationhub.bioconductor.org'
BTW: are the docker scripts that were used to create the bioc dockers under
http://www.bioconductor.org/help/docker/
somewhere available?
I guess this would be nice for developers to get an idea how to create
their own containers (with a choosen selection of packages different from
the provided ones ...)
Thx & Best,
Ludwig
--
Dipl.-Bioinf. Ludwig Geistlinger
Lehr- und Forschungseinheit für Bioinformatik
Institut für Informatik
Ludwig-Maximilians-Universität München
Amalienstrasse 17, 2. Stock, Büro A201
80333 München
Tel.: 089-2180-4067
eMail: Ludwig.Geistlinger at bio.ifi.lmu.de
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