November 2011 Archives by subject
Starting: Tue Nov 1 01:13:07 CET 2011
Ending: Wed Nov 30 23:53:07 CET 2011
Messages: 551
- [BioC] [ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
Halian Vilela
- [BioC] [ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
Zhu, Lihua (Julie)
- [BioC] [ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
Halian Vilela
- [BioC] [ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
Zhu, Lihua (Julie)
- [BioC] [ChIPpeakAnno] - What's the "annotatePeakInBatch" function expected running time ?
Zhu, Lihua (Julie)
- [BioC] [limma] Unreliable spots - omitting in avereps
mjonczyk
- [BioC] \"normalize a subset of affy data\" AND \"R help function\"
Anup Som [guest]
- [BioC] \"normalize a subset of affy data\" AND \"R help function\"
mjonczyk
- [BioC] Adding Multiple quadrantGates of Same Channels to workFlow (flowCore)
Aric Gregson
- [BioC] Adding Multiple quadrantGates of Same Channels to workFlow (flowCore)
Aric Gregson
- [BioC] Addition of Orangutan genome to BSgenomes
Colm Nestor
- [BioC] Addition of Orangutan genome to BSgenomes
Valerie Obenchain
- [BioC] Affy U133 array CEL files - how can i see individual probe signals?
Deb [guest]
- [BioC] Affy U133 array CEL files - how can i see individual probe signals?
Sean Davis
- [BioC] Agi4x44Preprocess/Limma and number of significant p-values
Paulo Nuin
- [BioC] Agi4x44Preprocess/Limma and number of significant p-values
Wei Xu
- [BioC] Analysis with SnpSet object CRLMM package
Chintan Vora - Xcelris
- [BioC] Analysis with SnpSet object CRLMM package
Benilton Carvalho
- [BioC] Analysis with SnpSet object CRLMM package
Chintan Vora - Xcelris
- [BioC] an error to open bam file
wang peter
- [BioC] an error to open bam file
Martin Morgan
- [BioC] annotate histograms
Wendy Qiao
- [BioC] annotate histograms
Janet L Smith
- [BioC] annotate histograms
Kevin R. Coombes
- [BioC] Annotation and enrichment of a short bed list
John linux-user
- [BioC] annotation db for miRNA_2 Array
Marc Carlson
- [BioC] annotation db for miRNA_2 Array
Marc Carlson
- [BioC] ArrayExpress error: unable to find an inherited method for function \"experimentData\", for signature \"try-error\"
Mikhail Spivakov [guest]
- [BioC] ArrayExpress error: unable to find an inherited method for function \"experimentData\", for signature \"try-error\"
Vincent Carey
- [BioC] ArrayExpress error: unable to find an inherited method for function \"experimentData\", for signature \"try-error\"
Mikhail Spivakov
- [BioC] ArrayExpress error: unable to find an inherited method for function \"experimentData\", for signature \"try-error\"
audrey kauffmann
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Adriana Munoz
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Valerie Obenchain
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Adriana Munoz
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Xavier de Pedro
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Valerie Obenchain
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Adriana Munoz
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Adriana Munoz
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Adriana Munoz
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Steffen Durinck
- [BioC] Attribute in snp mart to get SNP function (e.g. synonymous, nonsynonymous) ?
Adriana Munoz
- [BioC] Augmenting metadata values in GRanges object
Fahim Mohammad
- [BioC] Augmenting metadata values in GRanges object
Martin Morgan
- [BioC] Augmenting metadata values in GRanges object
Martin Morgan
- [BioC] Augmenting metadata values in GRanges object
Fahim Mohammad
- [BioC] bam or sam for counting
wang peter
- [BioC] bam or sam for counting
Martin Morgan
- [BioC] bam or sam for counting
Sean Davis
- [BioC] bayseq and edgeR for multi groups comparisons
lpascual
- [BioC] bayseq and edgeR for multi groups comparisons
Gordon K Smyth
- [BioC] baySeq plotPosteriors or plotMA question
Smith, Hilary A
- [BioC] baySeq plotPosteriors or plotMA question
Vincent Carey
- [BioC] Bioconductor, PHP, and R
hussein bazzi [guest]
- [BioC] Bioconductor, PHP, and R
Dan Tenenbaum
- [BioC] Bioconductor, PHP, and R
Dan Tenenbaum
- [BioC] Bioconductor, PHP, and R
Pierre-Yves Chibon
- [BioC] Bioconductor, PHP, and R
Hussein Hijazi
- [BioC] Bioconductor, PHP, and R
Sean Davis
- [BioC] Bioconductor, PHP, and R
Xavier de Pedro
- [BioC] Bioconductor 2.9 is released
Dan Tenenbaum
- [BioC] Bioconductor does not install properly
Bas Jansen
- [BioC] Bioconductor does not install properly
Vincent Carey
- [BioC] Bioconductor does not install properly
Benilton Carvalho
- [BioC] Bioconductor does not install properly
Bas Jansen
- [BioC] Bioinformatics/biostatistics position at the Institute of Cancer Research, UK
Daniel Brewer
- [BioC] biostrints translate() ambiguities?
James Walters [guest]
- [BioC] Block x Treatment interaction test with DeSeq
Miguel Gallach
- [BioC] Block x Treatment interaction test with DeSeq
Simon Anders
- [BioC] Chemometrics Analysis
Andre Dejam
- [BioC] ChIPpeakAnno, makeVennDiagram
Zhu, Lihua (Julie)
- [BioC] ChIPpeakAnno, makeVennDiagram
Zhu, Lihua (Julie)
- [BioC] compilation error for rtracklayer
rcaloger
- [BioC] compilation error for rtracklayer
Michael Lawrence
- [BioC] compilation error for rtracklayer
Martin Morgan
- [BioC] compilation error for rtracklayer
Michael Lawrence
- [BioC] Convert gene expression matrix to ExpressionSet
Wendy Qiao
- [BioC] Convert gene expression matrix to ExpressionSet
Martin Morgan
- [BioC] Convert gene expression matrix to ExpressionSet
Wendy Qiao
- [BioC] Convert gene expression matrix to ExpressionSet
Martin Morgan
- [BioC] Convert gene expression matrix to ExpressionSet
Wendy Qiao
- [BioC] Convert gene expression matrix to ExpressionSet
Robert Castelo
- [BioC] convert GeneSetCollection to a list
Wendy Qiao
- [BioC] convert GeneSetCollection to a list
Robert Castelo
- [BioC] Correlation analysis
Minh Bui
- [BioC] Correlation analysis
Sean Davis
- [BioC] Correlation analysis
Minh Bui
- [BioC] Correlation analysis
Sean Davis
- [BioC] CRAN packages maintained by you
Kurt Hornik
- [BioC] CRAN packages maintained by you
Nicholas Lewin-Koh
- [BioC] Customizing gplots heatmap.2 - color range for heatmap and legend for RowSideColors
Wong, Chao-Jen
- [BioC] custom SNPlocs / BSgenome package
km
- [BioC] custom SNPlocs / BSgenome package
Valerie Obenchain
- [BioC] density plot of pm values
Assa Yeroslaviz
- [BioC] density plot of pm values
James W. MacDonald
- [BioC] density plot of pm values
Naomi Altman
- [BioC] DESeq - read counts
Avinash S
- [BioC] DESeq - read counts
Wolfgang Huber
- [BioC] DESeq -SCVplot
Dawei Li
- [BioC] DESeq -SCVplot
Wolfgang Huber
- [BioC] DESeq adjusted pvalue calculation / filtering data
Markus Grohme
- [BioC] DESeq adjusted pvalue calculation / filtering data
Simon Anders
- [BioC] DESeq adjusted pvalue calculation / filtering data
Naomi Altman
- [BioC] DESeq adjusted pvalue calculation / filtering data
Markus Grohme
- [BioC] DESeq adjusted pvalue calculation / filtering data
Naomi Altman
- [BioC] DESeq Error: pobs == ps[kAs[i] + 1] is not TRUE
Robert Castelo
- [BioC] DESeq Error: pobs == ps[kAs[i] + 1] is not TRUE
Simon Anders
- [BioC] DEseq for sample clustering
Linn Fagerberg [guest]
- [BioC] DEseq for sample clustering
Wolfgang Huber
- [BioC] DESeq gene names under id
Mary Ann Allen
- [BioC] DESeq gene names under id
Simon Anders
- [BioC] design matrix limma
Reema Singh
- [BioC] design matrix limma
Sean Davis
- [BioC] diagnosing problems with processing microarray data using lumi package
Juliet Hannah
- [BioC] Does liftOver work for SNPs mapping to different chr between different builds
shirley zhang
- [BioC] Does liftOver work for SNPs mapping to different chr between different builds
Michael Lawrence
- [BioC] downloading GO from biomart through bioconductor
Brian Tsai
- [BioC] downloading GO from biomart through bioconductor
Marc Carlson
- [BioC] edd deprecation
Tim Rayner
- [BioC] edd deprecation
Vincent Carey
- [BioC] edgeR
Bogdan Tanasa
- [BioC] edgeR
Mark Robinson
- [BioC] edgeR
Bogdan Tanasa
- [BioC] edgeR
Bogdan Tanasa
- [BioC] edgeR - R script - results compared to DESeq
Avinash S
- [BioC] edgeR - R script - results compared to DESeq
Avinash S
- [BioC] edgeR - R script - results compared to DESeq
Avinash S
- [BioC] edgeR - R script - results compared to DESeq
Simon Anders
- [BioC] edgeR - R script - results compared to DESeq
Gordon K Smyth
- [BioC] edgeR - R script - results compared to DESeq
Smith, Hilary A
- [BioC] edgeR: exactTest different p value in new version 2.4
Sermsawat Tunlaya-anukit
- [BioC] edgeR: exactTest different p value in new version 2.4
Gordon K Smyth
- [BioC] edgeR: exactTest different p value in new version 2.4
Gordon K Smyth
- [BioC] EdgeR: Using estimateCommondisp for housekeeping genes
Tonya Mariko Brunetti
- [BioC] EdgeR: Using estimateCommondisp for housekeeping genes
Mark Robinson
- [BioC] EdgeR: Using estimateCommondisp for housekeeping genes
Tom Keller
- [BioC] edgeR: what to do with no replicates
Gordon K Smyth
- [BioC] edgeR: what to do with no replicates
Bogdan Tanasa
- [BioC] edgeR: what to do with no replicates
Gordon K Smyth
- [BioC] edgeR: what to do with no replicates
Bogdan Tanasa
- [BioC] edgeR and pair-wise comparison error by estimateGLMCommonDisp
Sheng [guest]
- [BioC] edgeR and pair-wise comparison error by estimateGLMCommonDisp
Gordon K Smyth
- [BioC] edgeR and pair-wise comparison error by estimateGLMCommonDisp
Gordon K Smyth
- [BioC] edgeR for miRNA
Lana Schaffer
- [BioC] edgeR for miRNA
Mark Robinson
- [BioC] edgeR on differentially expressed genes with low read counts
LucÃa [guest]
- [BioC] edgeR on differentially expressed genes with low read counts
Naomi Altman
- [BioC] edgeR on differentially expressed genes with low read counts
Simon Anders
- [BioC] edgeR on differentially expressed genes with low read counts
Gordon K Smyth
- [BioC] edgeR on differentially expressed genes with low read counts
Gordon K Smyth
- [BioC] error in DEXSeq fitDispersionFunction()
Georg Otto
- [BioC] Error in doing QC for 450K IlluminaHumanMeth data using methylumi
Shruti Rastogi
- [BioC] error in loading GLAD package
Qian Liu
- [BioC] error in loading GLAD package
Martin Morgan
- [BioC] error in loading GLAD package
Ramon Diaz-Uriarte
- [BioC] Error installing geneplotter
Ignacio Lopez de Ullibarri [guest]
- [BioC] Error installing geneplotter
Dan Tenenbaum
- [BioC] Error while building ExpressionSet from scratch....
Bas Jansen
- [BioC] Error while building ExpressionSet from scratch....
Vincent Carey
- [BioC] Error while building ExpressionSet from scratch....
john herbert
- [BioC] Error while building ExpressionSet from scratch....
Martin Morgan
- [BioC] Error while building ExpressionSet from scratch....
Bas Jansen
- [BioC] export Views of Rle in rtracklayer
Jason Lu
- [BioC] export Views of Rle in rtracklayer
Martin Morgan
- [BioC] export Views of Rle in rtracklayer
Michael Lawrence
- [BioC] export Views of Rle in rtracklayer
Jason Lu
- [BioC] export Views of Rle in rtracklayer
Michael Lawrence
- [BioC] export Views of Rle in rtracklayer
Jason Lu
- [BioC] export Views of Rle in rtracklayer
Michael Lawrence
- [BioC] export Views of Rle in rtracklayer
Jason Lu
- [BioC] Extracting variant nucleotides
Alpesh Querer
- [BioC] Extracting variant nucleotides
Michael Lawrence
- [BioC] Extracting variant nucleotides
Valerie Obenchain
- [BioC] Extracting variant nucleotides
Michael Lawrence
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Ivan Gregoretti
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Martin Morgan
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Michael Lawrence
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Michael Lawrence
- [BioC] extract introns
Steve Lianoglou
- [BioC] extract introns
Yating Cheng
- [BioC] extract introns
Hervé Pagès
- [BioC] fasta sequence is too long to be read
wang peter
- [BioC] fasta sequence is too long to be read
Steve Lianoglou
- [BioC] finding out which tags are in a bam-file
Hubert Rehrauer
- [BioC] finding out which tags are in a bam-file
Martin Morgan
- [BioC] Fwd: Bioconductor does not install properly
Dan Tenenbaum
- [BioC] Fwd: extract introns
Steve Lianoglou
- [BioC] Fwd: Re: Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
andrea.grilli at ior.it
- [BioC] gaoshan
wang peter
- [BioC] gaoshan
Martin Morgan
- [BioC] gene enrichment analysis without a control sample
Wendy Qiao
- [BioC] gene enrichment analysis without a control sample
Wu, Di
- [BioC] gene enrichment analysis without a control sample
Robert Castelo
- [BioC] gene enrichment analysis without a control sample
Wendy Qiao
- [BioC] gene enrichment analysis without a control sample
Wu, Di
- [BioC] Genentech Summer Internship Program 2012
Hsin-Ju Hsieh
- [BioC] GenomicFeatures makeTranscriptDbFromBiomart failure
Tim Rayner
- [BioC] GenomicFeatures makeTranscriptDbFromBiomart failure
Michael Lawrence
- [BioC] GenomicFeatures makeTranscriptDbFromBiomart failure
Marc Carlson
- [BioC] GenomicFeatures makeTranscriptDbFromBiomart failure
Tim Rayner
- [BioC] GenomicFeatures makeTranscriptDbFromBiomart failure
Hervé Pagès
- [BioC] GenomicRanges Use Cases - subsetByOverlaps
James Perkins
- [BioC] GenomicRanges Use Cases - subsetByOverlaps
Steve Lianoglou
- [BioC] goSeq error
Matthew Young
- [BioC] goSeq error
Matthew Young
- [BioC] goSeq error (steve Shen)
Alicia Oshlack
- [BioC] goseq problem
Christopher T Gregg
- [BioC] goseq problem
Christopher T Gregg
- [BioC] GRanges - coercion from dataframe
Fahim Mohammad
- [BioC] GRanges - coercion from dataframe
Fahim Mohammad
- [BioC] GRanges - coercion from dataframe
Michael Lawrence
- [BioC] GRanges - coercion from dataframe
Steve Lianoglou
- [BioC] GRanges - coercion from dataframe
Kasper Daniel Hansen
- [BioC] GRanges - reduce() function
Fahim Mohammad
- [BioC] GRanges - reduce() function
Jason Ross
- [BioC] GRanges - reduce() function
Vincent Carey
- [BioC] GRanges - reduce() function
Martin Morgan
- [BioC] GRanges - reduce() function
Kasper Daniel Hansen
- [BioC] GRanges - reduce() function
Fahim Mohammad
- [BioC] GRanges - reduce() function
Hervé Pagès
- [BioC] GRanges - reduce() function
Cook, Malcolm
- [BioC] GRanges - reduce() function
Hervé Pagès
- [BioC] GRanges - reduce() function
Fahim Mohammad
- [BioC] GRanges - reduce() function
Michael Lawrence
- [BioC] GRanges - reduce() function
Michael Lawrence
- [BioC] GRanges - reduce() function
Jason Ross
- [BioC] GRanges - reduce() function
Michael Lawrence
- [BioC] GSVA: using Entrez ID's as identifiers
Wendy Qiao
- [BioC] GSVA: using Entrez ID's as identifiers
Robert Castelo
- [BioC] GSVA: using Entrez ID's as identifiers
Wendy Qiao
- [BioC] GSVA: using Entrez ID's as identifiers
Robert Castelo
- [BioC] GSVA: using Entrez ID's as identifiers
Tom Keller
- [BioC] GSVA: using Entrez ID's as identifiers
Robert Castelo
- [BioC] GSVA: using Entrez ID's as identifiers
Robert Castelo
- [BioC] GSVA: using Entrez ID's as identifiers
Marc Carlson
- [BioC] GSVA: using Entrez ID's as identifiers
somnath bandyopadhyay
- [BioC] GSVA: using Entrez ID's as identifiers
Robert Castelo
- [BioC] GSVA: using Entrez ID's as identifiers
somnath bandyopadhyay
- [BioC] GSVA error when trying to bootstrap
somnath bandyopadhyay
- [BioC] GSVA error when trying to bootstrap
Justin Guinney
- [BioC] gwSnpTests in GGtools
francy [guest]
- [BioC] gwSnpTests in GGtools
Vincent Carey
- [BioC] gwSnpTests in GGtools
francesca casalino
- [BioC] gwSnpTests in GGtools
Vincent Carey
- [BioC] gwSnpTests in GGtools
francesca casalino
- [BioC] help on limma design for the agilent microarray
Ella Chang
- [BioC] How to extract Phenotype data from GSE
Reema Singh
- [BioC] How to extract Phenotype data from GSE
James F. Reid
- [BioC] how to remove redundant or error in transcripsome
wang peter
- [BioC] How to use limma to do 2 factors with multiple level analysis
Zhi Zhang
- [BioC] how to use writeFASTA
wang peter
- [BioC] how to use writeFASTA
Martin Morgan
- [BioC] HTqPCR and Biobase's eSet
Laurent Gautier
- [BioC] HTqPCR and Biobase's eSet
James Perkins
- [BioC] HTSanalyzeR GSEA Error
Dario Strbenac
- [BioC] HTSanalyzeR GSEA Error
Xin Wang
- [BioC] HTSanalyzeR GSEA Error
Dario Strbenac
- [BioC] IlluminaHumanMethylation450k.db Reference Versions
Dario Strbenac
- [BioC] IlluminaHumanMethylation450k.db Reference Versions
Tim Triche, Jr.
- [BioC] IlluminaHumanMethylation450k.db Reference Versions
Dario Strbenac
- [BioC] IlluminaHumanMethylation450k.db Reference Versions
Tim Triche, Jr.
- [BioC] IlluminaHumanMethylation450k.db Reference Versions
Marc Carlson
- [BioC] illuminaHumanv4 mappings
Valerie Deffontaine
- [BioC] Inconsistency in illuminaHumanv4.db ?
Holger [guest]
- [BioC] installation of bioconductopr packages fails
Ina Hoeschele
- [BioC] installation of bioconductopr packages fails
Kasper Daniel Hansen
- [BioC] installation problems with goseq
Claudia Calabrese
- [BioC] installation problems with goseq
Martin Morgan
- [BioC] installation problems with goseq
Claudia Calabrese
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Firas Swidan
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Vincent Carey
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Dan Tenenbaum
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Firas Swidan
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Dan Tenenbaum
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Firas Swidan
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Dan Tenenbaum
- [BioC] Installing Bioconductor packages on R 2.14.0 *without* administrator rights / from a script
Firas Swidan
- [BioC] installing gtk for EBImage
Ravi [guest]
- [BioC] intragenic sequence extraction
Yating Cheng
- [BioC] intragenic sequence extraction
Steve Lianoglou
- [BioC] issue with limma?
Kripa R
- [BioC] issue with limma?
Wei Shi
- [BioC] issue with limma?
Sean Davis
- [BioC] KEGGSOAP incomplete list.pathways
kevin [guest]
- [BioC] KEGGSOAP incomplete list.pathways
Marc Carlson
- [BioC] Limma Dual Color Agilent : Mixed model or not ?
Guillaume Meurice
- [BioC] Limma question: readGenericHeader error message
Ella Chang
- [BioC] Limma question: readGenericHeader error message
Gordon K Smyth
- [BioC] Limma warnings and how to extract normalized CY5, CY3 intensities
asas asasa
- [BioC] Limma warnings and how to extract normalized CY5, CY3 intensities
Christian Brière
- [BioC] lumi: Methylation450 Data Input
Jiayi Sun
- [BioC] lumi: Methylation450 Data Input
Wong, Chao-Jen
- [BioC] lumi: Methylation450 Data Input
Jiayi Sun
- [BioC] making valid model matrix for using SNM package
Wendy Qiao
- [BioC] MA plots for large number of arrays
Juliet Hannah
- [BioC] MA plots for large number of arrays
James W. MacDonald
- [BioC] MA plots for large number of arrays
James W. MacDonald
- [BioC] MA plots for large number of arrays
mjonczyk
- [BioC] MA plots for large number of arrays
Martin Morgan
- [BioC] Maximal length of Rle vectors
Hans-Ulrich Klein
- [BioC] Maximal length of Rle vectors
Hervé Pagès
- [BioC] meta analysis
Joao Fadista
- [BioC] meta analysis
Joao Fadista
- [BioC] minfi F-test Results
Dario Strbenac
- [BioC] Multiple groups comparison using EdgeR
Xiaohui Wu
- [BioC] Multiple groups comparison using EdgeR
Xiaohui Wu
- [BioC] Need help for designing microarray experiment
Christian Brière
- [BioC] Normalization in Coverage
rohan bareja
- [BioC] Normalization in Coverage
Valerie Obenchain
- [BioC] Normalization in Coverage
rohan bareja
- [BioC] Normalization in Coverage
Valerie Obenchain
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Stefanie Ververs
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Oscar Flores
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Stefanie Ververs
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Oscar Flores
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Martin Morgan
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Stefanie Ververs
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Stefanie Ververs
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Martin Morgan
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Stefanie Ververs
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Oscar Flores
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Stefanie Ververs
- [BioC] NucleR: processReads/solveUserSEW0 - Error
Oscar Flores
- [BioC] objective criterion for identification of outlying arrays by pca
Richard Friedman
- [BioC] objective criterion for identification of outlying arrays by pca
James W. MacDonald
- [BioC] objective criterion for identification of outlying arrays by pca
Vincent Carey
- [BioC] objective criterion for identification of outlying arrays by pca
Kevin R. Coombes
- [BioC] objective criterion for identification of outlying arrays by pca
Richard Friedman
- [BioC] objective criterion for identification of outlying arrays by pca
Kevin R. Coombes
- [BioC] objective criterion for identification of outlying arrays by pca
shirley0818
- [BioC] objective criterion for identification of outlying arrays by pca IN GENE ST1.0 CHIPS
Richard Friedman
- [BioC] objective criterion for identification of outlying arrays by pca IN GENE ST1.0 CHIPS
Vincent Carey
- [BioC] objective criterion for identification of outlying arrays by pca IN GENE ST1.0 CHIPS
Benilton Carvalho
- [BioC] objective criterion for identification of outlying arrays by pca IN GENE ST1.0 CHIPS
Richard Friedman
- [BioC] objective criterion for identification of outlying arrays by pca IN GENE ST1.0 CHIPS
cstrato
- [BioC] package Genominator with ShortRead-annotation question
nitzan kol [guest]
- [BioC] package Genominator with ShortRead-annotation question
Kasper Daniel Hansen
- [BioC] package NEWS, README, and INSTALL files available on web site
Dan Tenenbaum
- [BioC] Packages reproducing phylogenetic tree from output of MEGA
Dejian Zhao
- [BioC] Packages reproducing phylogenetic tree from output of MEGA
Ron Ophir
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Karl Brand
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Dan Tenenbaum
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
James W. MacDonald
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Martin Morgan
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Iain Gallagher
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Karl Brand
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Karl Brand
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Mike Smith
- [BioC] package ‘DAVIDQuery’ is not available (for R version 2.14.0)
Karl Brand
- [BioC] permutate data matrix
Kripa R
- [BioC] permutate data matrix
James W. MacDonald
- [BioC] permutate data matrix
Kripa R
- [BioC] permutation loop
Kripa R
- [BioC] permutation loop
Achilleas Pitsillides
- [BioC] PFAM gene enrichment test using GOstats and Category
Henrik De Fine Licht
- [BioC] PFAM gene enrichment test using GOstats and Category
Marc Carlson
- [BioC] PhD position available in Innsbruck, Austria
Johannes Rainer
- [BioC] PhD position available in Innsbruck, Austria
Johannes Rainer
- [BioC] phenodata GEOquery query
Reema Singh
- [BioC] phenodata GEOquery query
Sean Davis
- [BioC] Plot Multiple 'Backgates' Simultaneously flowViz
Aric Gregson
- [BioC] possible bug in ShortRead qa/ppnCount
Janet Young
- [BioC] possible bug in ShortRead qa/ppnCount
Martin Morgan
- [BioC] Possible bug in SNPchip
Francesco Mancuso
- [BioC] Possible bug in SNPchip
Robert Scharpf
- [BioC] Predicted overlaps of 3 gene lists
Edwin Groot
- [BioC] Probe level normalization
suri ghani
- [BioC] Probe level normalization
James W. MacDonald
- [BioC] Probe level normalization
wang peter
- [BioC] problem in normalizing single channel gar file
Niraj Nepal
- [BioC] Problem installing KEGGSOAP
Paolo Sonego
- [BioC] Problem installing KEGGSOAP
Adam Rivers
- [BioC] Problem installing KEGGSOAP
Dan Tenenbaum
- [BioC] Problems installing sva and bladderbatch
James Wagner
- [BioC] Problems installing sva and bladderbatch
Martin Morgan
- [BioC] Problems installing sva and bladderbatch
Vincent Carey
- [BioC] Problems installing sva and bladderbatch
David Iles
- [BioC] Problems installing sva and bladderbatch
James Wagner
- [BioC] Problems installing sva and bladderbatch
Martin Morgan
- [BioC] problem using affxparser on MacOSX
Fabrice Berger
- [BioC] problem using affxparser on MacOSX
Sean Davis
- [BioC] problem using affxparser on MacOSX
Fabrice Berger
- [BioC] problem using affxparser on MacOSX
Noah Dowell
- [BioC] problem using affxparser on MacOSX
Noah Dowell
- [BioC] problem with frma on U133AAofAv2 platform
Wang,Ying
- [BioC] problem with frma on U133AAofAv2 platform
Matthew McCall
- [BioC] problem with GO terms
Ina Hoeschele
- [BioC] problem with GO terms
James W. MacDonald
- [BioC] problem with GO terms
Ina Hoeschele
- [BioC] problem with GO terms
Ina Hoeschele
- [BioC] problem with GO terms
James W. MacDonald
- [BioC] problem with GO terms
Ina Hoeschele
- [BioC] problem with GO terms
Ina Hoeschele
- [BioC] problem with GO terms
James W. MacDonald
- [BioC] problem with GO terms
Marc Carlson
- [BioC] problem with GO terms
Ina Hoeschele
- [BioC] problem with IGH genes in org.Hs.egCHRLOC
Francois Pepin
- [BioC] problem with IGH genes in org.Hs.egCHRLOC
Marc Carlson
- [BioC] problem with IGH genes in org.Hs.egCHRLOC
Francois Pepin
- [BioC] problem with using GSVA package
Wendy Qiao
- [BioC] problem with using GSVA package
Juan Roberto CASTELO VALDUEZA
- [BioC] problem with using GSVA package
Wendy Qiao
- [BioC] problem with using GSVA package
Robert Castelo
- [BioC] problem with using GSVA package
Lapointe, David
- [BioC] problem with using GSVA package
Robert Castelo
- [BioC] problem with using GSVA package
Lapointe, David
- [BioC] problem with using GSVA package
Robert Castelo
- [BioC] problem with using GSVA package
Robert Castelo
- [BioC] problem with using GSVA package
Lapointe, David
- [BioC] R/Bioc workshops on Dec 8-12 at UC Riverside
Thomas Girke
- [BioC] Re2:
danieladna
- [BioC] RE : RE : rsamtools installation
Wolfgang RAFFELSBERGER
- [BioC] RE : RE : rsamtools installation
Martin Morgan
- [BioC] RE : rsamtools installation
Wolfgang RAFFELSBERGER
- [BioC] RE : rsamtools installation
Martin Morgan
- [BioC] readCelFile function in Starr is crashing R
Noah Dowell [guest]
- [BioC] readCelFile function in Starr is crashing R
Kasper Daniel Hansen
- [BioC] readCelFile function in Starr is crashing R
Noah Dowell
- [BioC] readPileup() Error
Ron Ophir
- [BioC] readPileup() Error
Vincent Carey
- [BioC] readPileup() Error
Martin Morgan
- [BioC] readPileup() Error
Ron Ophir
- [BioC] remove affy probes with common SNPs
Joao Fadista
- [BioC] Repitools/ClusterPlots
gillian [guest]
- [BioC] Repitools/ClusterPlots
Vincent Carey
- [BioC] Repitools/ClusterPlots
Wong, Chao-Jen
- [BioC] Repitools/ClusterPlots
Mark Robinson
- [BioC] retrieve the level for a GO category
Biase, Fernando Henrique
- [BioC] retrieve the level for a GO category
Martin Morgan
- [BioC] retrieve the level for a GO category
Vincent Carey
- [BioC] Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Royce Francis
- [BioC] Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Sean Davis
- [BioC] Rgraphviz produces segmentation fault when attempting to plot Bayesian Belief Networks
Royce Francis
- [BioC] RNAseq expression analysis using DESeq: technical replicates, paired samples
Michael Muratet
- [BioC] RNAseq expression analysis using DESeq: technical replicates, paired samples
Simon Anders
- [BioC] RNAseq expression analysis using DESeq: technical replicates, paired samples
Michael Muratet
- [BioC] RNAseq expression analysis using DESeq: technical replicates, paired samples
Simon Anders
- [BioC] Rsamtools installation
John Coulthard
- [BioC] Rsamtools installation
Steve Lianoglou
- [BioC] Rsamtools installation
James W. MacDonald
- [BioC] Rsamtools installation
John Coulthard
- [BioC] Rsamtools installation
Vincent Carey
- [BioC] Rsamtools installation
Vincent Carey
- [BioC] Rsamtools installation
John Coulthard
- [BioC] rsamtools installation
kevin [guest]
- [BioC] rsamtools installation
Martin Morgan
- [BioC] rsamtools installation
Xavier de Pedro
- [BioC] rtracklayer fails to load in the new Bioconductor devel branch
Ivan Gregoretti
- [BioC] rtracklayer fails to load in the new Bioconductor devel branch
Martin Morgan
- [BioC] selecting/filtering probesets from exprSet object prior to diff. exp. anal.
Mark Baumeister
- [BioC] selecting/filtering probesets from exprSet object prior to diff. exp. anal.
James W. MacDonald
- [BioC] selecting/filtering probesets from exprSet object prior to diff. exp. anal.
Mark Baumeister
- [BioC] selecting/filtering probesets from exprSet object prior to diff. exp. anal.
James W. MacDonald
- [BioC] seqSegment readGeneric() function error
jiayu wen
- [BioC] seqSegment readGeneric() function error
Martin Morgan
- [BioC] significant test when number of sample are only two???
neeraj rana
- [BioC] solution for affy human 500k mapping snp array
Xiaokuan Wei
- [BioC] solution for affy human 500k mapping snp array
Vincent Carey
- [BioC] solution for affy human 500k mapping snp array
Xiaokuan Wei
- [BioC] solution for affy human 500k mapping snp array
Benilton Carvalho
- [BioC] SOLVED Re: Bioconductor does not install properly
Bas Jansen
- [BioC] some basic questions
anand mt [guest]
- [BioC] some basic questions
Richard Friedman
- [BioC] some basic questions
Sean Davis
- [BioC] Some more rtracklayer questions (re: WIG and .VSTEP files)
Tim Triche, Jr.
- [BioC] Some more rtracklayer questions (re: WIG and .VSTEP files)
Michael Lawrence
- [BioC] Some more rtracklayer questions (re: WIG and .VSTEP files)
Tim Triche, Jr.
- [BioC] Some more rtracklayer questions (re: WIG and .VSTEP files)
Michael Lawrence
- [BioC] sub-setting arrays
Assa Yeroslaviz
- [BioC] sub-setting arrays
Heidi Dvinge
- [BioC] sub-setting arrays
Vincent Carey
- [BioC] subsetting IntegerList by list names
Manuela Hummel
- [BioC] subsetting IntegerList by list names
Martin Morgan
- [BioC] subsetting IntegerList by list names
Steve Lianoglou
- [BioC] subsetting IntegerList by list names
Martin Morgan
- [BioC] subsetting IntegerList by list names
Tom Keller
- [BioC] subsetting IntegerList by list names
Hervé Pagès
- [BioC] Sudden Issue with add for lymphGate in flowCore
Aric Gregson
- [BioC] Sudden Issue with add for lymphGate in flowCore
Martin Morgan
- [BioC] the procedure to annotate assembled transcriptom
wang peter
- [BioC] the procedure to annotate assembled transcriptom
Sean Davis
- [BioC] TMM and calcNormFactors: Normalization in baySeq to match, edgeR and DESeq (Smith, Hilary A)
Thomas J Hardcastle
- [BioC] TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Smith, Hilary A
- [BioC] TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Wolfgang Huber
- [BioC] TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Gordon K Smyth
- [BioC] TMM and calcNormFactors: Normalization in baySeq to match edgeR and DESeq
Smith, Hilary A
- [BioC] topGO error, likely from topDiffGenes method of selection
Ian Mc Dowell
- [BioC] topGO using de novo assembled transcriptome
oystercow
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Rongkun Shen [guest]
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Dan Tenenbaum
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Dan Tenenbaum
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Rongkun Shen
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Martin Morgan
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Rongkun Shen
- [BioC] try to install bioc v2.9 but always get v2.8 in centos 5.1
Dan Tenenbaum
- [BioC] Tuning segment() in DNAcopy package to get more segments on each chromosome
Qian Liu
- [BioC] Tuning segment() in DNAcopy package to get more segments on each chromosome
Sean Davis
- [BioC] Tuning segment() in DNAcopy package to get more segments on each chromosome
Qian Liu
- [BioC] Two channel data vs. one colour data for PCA, heatmaps and clustering
john herbert
- [BioC] Two channel data vs. one colour data for PCA, heatmaps and clustering
mjonczyk
- [BioC] Two channel data vs. one colour data for PCA, heatmaps and clustering
Samuel Wuest
- [BioC] Two channel data vs. one colour data for PCA, heatmaps and clustering
john herbert
- [BioC] Two channel data vs. one colour data for PCA, heatmaps and clustering
Mayer, Claus-Dieter
- [BioC] Two channel data vs. one colour data for PCA, heatmaps and clustering
john herbert
- [BioC] Use of glm for multivariate logistic regression of microarray data
Ruppert Valentino
- [BioC] Using GTF gene annotation to build a GemomicRanges Object
sunny [guest]
- [BioC] Using GTF gene annotation to build a GemomicRanges Object
Vincent Carey
- [BioC] Using GTF gene annotation to build a GemomicRanges Object
Sunny Yu Liu
- [BioC] Using GTF gene annotation to build a GemomicRanges Object
Michael Lawrence
- [BioC] Using GTF gene annotation to build a GemomicRanges Object
Sunny Yu Liu
- [BioC] Using proportions...
Jim Silverton
- [BioC] Using proportions...
Wolfgang Huber
- [BioC] Using proportions...
Wolfgang Huber
- [BioC] Using Rscript to run DEXSeq on Linux cluster
Christopher T Gregg
- [BioC] Using Rscript to run DEXSeq on Linux cluster
Steve Lianoglou
- [BioC] Using Rscript to run DEXSeq on Linux cluster
Wolfgang Huber
- [BioC] VanillaICE
Francesco Mancuso
- [BioC] VanillaICE
Valerie Obenchain
- [BioC] VanillaICE
Robert Scharpf
- [BioC] visualise model fit in edgeR
Gordon K Smyth
- [BioC] visualizing genomic data
Bogdan Tanasa
- [BioC] visualizing genomic data
Tengfei Yin
- [BioC] visualizing genomic data
Marc Carlson
- [BioC] Welcome to the "Bioconductor" mailing list
Adriana Munoz
- [BioC] Welcome to the "Bioconductor" mailing list
Hervé Pagès
- [BioC] Welcome to the "Bioconductor" mailing list
Ramon Diaz-Uriarte
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
shirley zhang
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
Hervé Pagès
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
shirley zhang
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
shirley zhang
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
Sean Davis
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
shirley zhang
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
Sean Davis
- [BioC] where to get chr_rpts file for dbSNP human 36.3 assembly
shirley zhang
- [BioC] which statistical test to perform?
anand mt [guest]
- [BioC] which statistical test to perform?
Sean Davis
- [BioC] which statistical test to perform?
Sean Davis
- [BioC] which statistical test to perform?
anand m t
- [BioC] which statistical test to perform?
Richard Friedman
- [BioC] Why are there different number of pathways in pathway2gene and in pathway2name (KEGG.db)?
Marc Carlson
Last message date:
Wed Nov 30 23:53:07 CET 2011
Archived on: Thu Dec 1 13:03:11 CET 2011
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