[BioC] installation of bioconductopr packages fails

[Kasper Daniel Hansen]

Most likely you have saved versions of biocLite in your workspace.
Remove those and re-do.

Kasper

On Mon, Nov 28, 2011 at 4:02 PM, Ina Hoeschele <inah at vbi.vt.edu> wrote:
> Hi,
>  I cannot install any bioconductor packages right now - sorry but can someone tell me what is wrong? Please see below.
> Thanks, Ina
>
>> source("http://bioconductor.org/biocLite.R")
>> biocLite("limma")
> Using R version 2.14.0, biocinstall version 2.8.4.
> Installing Bioconductor version 2.8 packages:
> [1] "limma"
> Please wait...
>
> Warning: unable to access index for repository http://bioconductor.org/packages/2.8/bioc/bin/windows/contrib/2.14
> Warning: unable to access index for repository http://bioconductor.org/packages/2.8/data/annotation/bin/windows/contrib/2.14
> Warning: unable to access index for repository http://bioconductor.org/packages/2.8/data/experiment/bin/windows/contrib/2.14
> Warning: unable to access index for repository http://brainarray.mbni.med.umich.edu/bioc/bin/windows/contrib/2.14
> Warning message:
> In getDependencies(pkgs, dependencies, available, lib) :
>  package ‘limma’ is not available (for R version 2.14.0)
>
> R version 2.14.0 (2011-10-31)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=English_United States.1252
> [2] LC_CTYPE=English_United States.1252
> [3] LC_MONETARY=English_United States.1252
> [4] LC_NUMERIC=C
> [5] LC_TIME=English_United States.1252
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.2.1
>
> loaded via a namespace (and not attached):
> [1] tools_2.14.0
>
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