[BioC] Packages reproducing phylogenetic tree from output of MEGA

[Ron Ophir]

>There are various packages on CRAN to cope with phylogenetic analysis.
I 
>wonder _*which package can read the output from other phylogenetic 
>softwares, e.g. MEGA, and reproduce the phylogenetic tree*_. I want to 
>produce a picture which combines the phylogenetic tree and the
structure 
>of each gene.

Dear Dejian Zhao,

You can save the tree from MEGA in newick format. 
APE is an R package that reads newick format and has a lot of options to
plot phylogenetic trees.

Ron

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