[BioC] problem with GO terms
Ina Hoeschele
inah at vbi.vt.edu
Tue Nov 22 19:03:03 CET 2011
thank you, Jim ...
I did what you show below and I get the same result:
> get("GO:0050864", org.Hs.egGO2EG)
Error in .checkKeys(value, Rkeys(x), x at ifnotfound) :
value for "GO:0050864" not found
but why is GOstats giving me this GO term?
Thanks again, Ina
> sessionInfo()
R version 2.14.0 (2011-10-31)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] biomaRt_2.10.0 GOstats_2.20.0
[3] graph_1.32.0 Category_2.20.0
[5] PFAM.db_2.6.1 KEGG.db_2.6.1
[7] GO.db_2.6.1 annotate_1.32.0
[9] illuminaHumanv4.db_1.12.1 org.Hs.eg.db_2.6.4
[11] RSQLite_0.10.0 DBI_0.2-5
[13] AnnotationDbi_1.16.4 Biobase_2.14.0
[15] BiocInstaller_1.2.1
loaded via a namespace (and not attached):
[1] genefilter_1.36.0 GSEABase_1.16.0 IRanges_1.12.2 RBGL_1.30.1
[5] RCurl_1.7-0.1 splines_2.14.0 survival_2.36-10 tools_2.14.0
[9] XML_3.4-2.2 xtable_1.6-0
>
More information about the Bioconductor
mailing list