[BioC] installation problems with goseq

[Martin Morgan]

On 11/08/2011 06:50 AM, Claudia Calabrese wrote:
> Hi all!
> I'm trying to install the 'goseq' package but it returns an error. I'm
> working with the R version 2.11.1 (2010-05-31).
> The code is:
>
>> source("http://www.bioconductor.org/biocLite.R")
> BioC_mirror = http://www.bioconductor.org
> Change using chooseBioCmirror().
>> bioclite("goseq")
> Using R version 2.11.1, biocinstall version 2.6.10.
> Installing Bioconductor version 2.6 packages:
> [1] "goseq"
> Please wait...
>
> Warning in install.packages(pkgs= pkgs, repos= repos, ...) :
>   argument 'lib' is missing: using 'Users/macbookpro/Library/R/2.11/library'
> also installing the dependencies 'BiasedUrn', 'geneLenDataBase'
>
> I try with the URL '
> http://rm.mirror.garr.it/mirrors/CRAN/bin/macosx/leopard/contrib/2.11/BiasedUrn_1.03.tgz
> '
> Content type 'application/x-gzip' length 313797 bytes (306kb)
> Open URL
> ==================================
> downloaded 306 kb

Hi Claudia -- you might try an alternative Bioconductor

   source("http://bioconductor.org/biocLite.R")
   chooseBioCmirror()

or CRAN mirror; the mirror in Dortmund would be a particular good choice.

Martin

>
>
> And so the process freezes at this point..
>
> Could be a problem with the R version I use??
>
> Thank you in advance
>
>
> Best
> Claudia
>


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