[BioC] Correlation analysis

[Sean Davis]

Hi, Minh.

By "correlation analysis", you mean that you want to find the gene
closest to each HIV site?  If so, take a look at the GenomicRanges
package.

If you are more of a web server point-and-click person, take a look at
using galaxy:

http://main.g2.bx.psu.edu/

Sean


On Mon, Nov 7, 2011 at 5:52 PM, Minh Bui <buiduyminh at gmail.com> wrote:
> Hi everyone,
>
> I am new to Bioconductor and R. I did search through the list for my
> problem but i can't find it. I am sorry if this question has been asked.
>
> I would like to perform a correlation analysis between a hiv data and gene
> expression.
>
> Basically, i have a file that contains: hiv_name, start_position,
> end_position, chromosome. I would like to see if these data has anything to
> do with the location of our genes (I also have another file contains
> gene_name, start_position, end_position, chromosome).
>
> What functions that allow me to do this?
>
> Hopefully someone can guide me to the right direction.
>
>
> Thank you very much,
>
> --
>
> ------------------------------------------------------------------------------------
> Minh Bui
> Bioinformatic Research, MicroBiome Analysis Center
> George Mason University, Prince William Campus
> 10900 University Boulevard, MSN 4D4
> Manassas, Virginia  20110
> http://mbac.gmu.edu
> ------------------------------------------------------------------------------------
>
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>
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