[BioC] rsamtools installation

[kevin [guest]]

hi,

   having difficulties installing Rsamtools, through biocLite:

Warning: replacing previous import ‘.__C__file’ when loading ‘Biostrings’
Warning: replacing previous import ‘.__C__connection’ when loading ‘Biostrings’
Error : classes "file", "connection" are not exported by 'namespace:Biostrings'
ERROR: lazy loading failed for package ‘Rsamtools’
* removing ‘/home/kthom110/R/x86_64-pc-linux-gnu-library/2.12/Rsamtools’
* restoring previous ‘/home/kthom110/R/x86_64-pc-linux-gnu-library/2.12/Rsamtools’

The downloaded packages are in
	‘/tmp/Rtmp6N3TVN/downloaded_packages’
Warning message:
In install.packages(pkgs = pkgs, repos = repos, ...) :
  installation of package 'Rsamtools' had non-zero exit status

  and via R CMD INSTALL Rsamtools/

Error : package 'bitops' does not have a name space
ERROR: lazy loading failed for package ‘Rsamtools’
* removing ‘/home/kthom110/R/x86_64-pc-linux-gnu-library/2.12/Rsamtools’
* restoring previous ‘/home/kthom110/R/x86_64-pc-linux-gnu-library/2.12/Rsamtools


any help will be appreciated,
kevin

 -- output of sessionInfo(): 

R version 2.12.1 (2010-12-16)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] Biostrings_2.22.0 IRanges_1.12.1   

loaded via a namespace (and not attached):
[1] tools_2.12.1


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