[BioC] Analysis with SnpSet object CRLMM package

[Benilton Carvalho]

Say that your SnpSet object is called 'crlmmOutput', you can run:

theCalls = calls(crlmmOutput)
theConfs = confs(crlmmOutput)

to get the genotype calls (1 - AA; 2 - AB; 3 - BB) and their
respective confidence scores.

b

On 28 November 2011 09:32, Chintan Vora - Xcelris
<chintan.vora at xcelrislabs.com> wrote:
> Dear Mathew,
>
> I am new to genotyping data analysis using R.
> I was going through your package CRLMM. I used the commands
> "readIdatFiles" and "crlmmIllumina".
>
> I am now wondering what to do with SNPSet object.
>
> Can you please explain me how can I use this object further?
> --
>
> Regards,
> Chintan Vora
> Sr. Research Associate
> Xcelris Labs Ltd.
> Old Premchandnagar Road,
> Bodakdev, Ahmedabad-380 054 India.
> Tel: +91-79-66197777/66311114
> Fax: +91-79-66309341
> Email: chintan.vora at xcelrislabs.com
> Website: www.xcelrisgenomics.com
>
>
>
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