[BioC] error in loading GLAD package

[Ramon Diaz-Uriarte]

On Wed, 09 Nov 2011 13:15:29 -0800,Martin Morgan <mtmorgan at fhcrc.org> wrote:
> On 11/09/2011 09:56 AM, Qian Liu wrote:
> > Hi all,
> > I have trouble loading GLAD package, does someone know what the error
> > mean? also there is a pop-up window saying system error, missing
> > libgsl-0.dll
> > Thanks,

> Hi Qian -- on the package home page

> http://bioconductor.org/packages/release/bioc/html/GLAD.html

> the 'System Requirements' field notes that

> gsl. Note: users should have GSL installed. Windows users: 'consult the 
> README file available in the inst directory of the source distribution 
> for necessary configuration instructions'.

> Have you followed those directions?


Hi Quian and Martin,

If I remember correctly, however, libgsl-0.dll is not part of the GSL for
Windows that you get from http://gnuwin32.sourceforge.net/packages/gsl.htm
(libgsl-0.dll is part of the Cygwin version). So even if you were to
follow the instructions, you might not get things to work. If that is the
case, you might need to copy libgsl.dll as libgsl-0.dll.


Best,

R.


> Best, Martin

> > Qian
> >>     source("http://bioconductor.org/biocLite.R")
> >>      biocLite("GLAD")
> >> library(GLAD)
> > Error in inDL(x, as.logical(local), as.logical(now), ...) :
> >    unable to load shared object
> > 'C:/ProgramFiless/R-2.14.0/library/GLAD/libs/i386/GLAD.dll':
> >    LoadLibrary failure:  The specified module could not be found.
> >
> > Error: package/namespace load failed for ‘GLAD’
> >> sessionInfo()
> > R version 2.14.0 (2011-10-31)
> > Platform: i386-pc-mingw32/i386 (32-bit)
> >
> > locale:
> > [1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United
> > States.1252
> > [3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
> > [5] LC_TIME=English_United States.1252
> >
> > attached base packages:
> > [1] stats     graphics  grDevices utils     datasets  methods   base
> >
> > other attached packages:
> >   [1] DNAcopy_1.28.0         aroma.affymetrix_2.3.0 affxparser_1.26.1
> >     aroma.apd_0.2.0
> >   [5] R.huge_0.3.0           aroma.core_2.3.0       aroma.light_1.22.0
> >     matrixStats_0.3.0
> >   [9] R.rsp_0.6.7            R.cache_0.5.2          R.filesets_1.1.3
> >     digest_0.5.1
> > [13] R.utils_1.9.3          R.oo_1.8.3             R.methodsS3_1.2.1
> >     BiocInstaller_1.2.0
> >
> > loaded via a namespace (and not attached):
> > [1] tools_2.14.0
> >
> > _______________________________________________
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> > Bioconductor at r-project.org
> > https://stat.ethz.ch/mailman/listinfo/bioconductor
> > Search the archives: http://news.gmane.org/gmane.science.biology.informatics.conductor


> -- 
> Computational Biology
> Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109

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-- 
Ramon Diaz-Uriarte
Department of Biochemistry, Lab B-25.
Facultad de Medicina (UAM)
Arzobispo Morcillo, 2
28029 Madrid
Spain


Phone: +34-91-497-2412

Email: rdiaz02 at gmail.com
       ramon.diaz at iib.uam.es

http://ligarto.org/rdiaz