[BioC] Repitools/ClusterPlots

[gillian [guest]]

I'm following the Repitools_vignette instruction guide (http://www.bioconductor.org/packages/devel/bioc/vignettes/Repitools/inst/doc/Repitools_vignette.pdf) and I'm stuck with the part where you need to use clusterPlots.

>From the guide it seems like clusterPlots is part of Repitools, but I have Repitools installed (featureScores, for example, works fine), and clusterPlots doesn't work:

> cpUnscaled=clusterPlots(fsUnscaled,n.clusters=1,plot.type='line')Error: could not find function "clusterPlots"

So it looks like I don't have whatever library it's a part of installed, but I can't tell what that is.  I've got pretty much everything from the session info of the guide installed:
Their Session Info:
This vignette was created in:
sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_AU.UTF-8
[3] LC_TIME=en_AU.UTF-8
[5] LC_MONETARY=C
[7] LC_PAPER=en_AU.UTF-8
[9] LC_ADDRESS=C
[11] LC_MEASUREMENT=en_AU.UTF-8
LC_NUMERIC=C
LC_COLLATE=en_AU.UTF-8
LC_MESSAGES=en_AU.UTF-8
LC_NAME=C
LC_TELEPHONE=C
LC_IDENTIFICATION=C
attached base packages:
[1] grid
stats
graphics
[8] base
grDevices utils
other attached packages:
[1] BSgenome.Hsapiens36bp.UCSC.hg18mappability_1.0
[2] gplots_2.8.0
[3] caTools_1.12
[4] bitops_1.0-4.1
[5] gdata_2.8.2
[6] gtools_2.6.2
[7] Ringo_1.16.0
[8] 
Matrix_0.999375-50

[9] lattice_0.19-26
[10] limma_3.8.2
[11] RColorBrewer_1.0-2
[12] Biobase_2.12.1
[13] edgeR_2.2.5
[14] BSgenome.Hsapiens.UCSC.hg18_1.3.17
[15] BSgenome_1.20.0
[16] Biostrings_2.20.1
[17] Repitools_0.99.1
[18] GenomicRanges_1.4.6
[19] IRanges_1.10.4








loaded via a namespace (and not attached):
[1] annotate_1.30.0
    AnnotationDbi_1.14.1 
    DBI_0.2-5
[4] genefilter_1.34.0
    RSQLite_0.9-4
    splines_2.13.0
[7] survival_2.36-9
    xtable_1.5-6


but still no luck.  Anyone got any idea where I can find clusterPlots, or what I'm missing?

Thanks,

Gillian


 -- output of sessionInfo(): 

> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=en_GB.utf8       LC_NUMERIC=C             
 [3] LC_TIME=en_GB.utf8        LC_COLLATE=en_GB.utf8    
 [5] LC_MONETARY=C             LC_MESSAGES=en_GB.utf8   
 [7] LC_PAPER=en_GB.utf8       LC_NAME=C                
 [9] LC_ADDRESS=C              LC_TELEPHONE=C           
[11] LC_MEASUREMENT=en_GB.utf8 LC_IDENTIFICATION=C      

attached base packages:
[1] grid      stats     graphics  grDevices utils     datasets  methods  
[8] base     

other attached packages:
 [1] gplots_2.10.1       KernSmooth_2.23-5   caTools_1.12       
 [4] bitops_1.0-4.1      gdata_2.8.2         gtools_2.6.2       
 [7] Ringo_1.16.0        Matrix_1.0-1        lattice_0.19-26    
[10] limma_3.8.1         RColorBrewer_1.0-5  Biobase_2.12.1     
[13] edgeR_2.2.6         Rsamtools_1.4.3     Biostrings_2.20.0  
[16] GenomicRanges_1.4.3 IRanges_1.10.0      Repitools_1.1.0    

loaded via a namespace (and not attached):
 [1] annotate_1.30.1      AnnotationDbi_1.14.1 BSgenome_1.20.0     
 [4] DBI_0.2-5            genefilter_1.34.0    RSQLite_0.9-4       
 [7] splines_2.13.0       survival_2.36-9      tools_2.13.0        
[10] xtable_1.6-0   

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