January 2014 Archives by thread

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Starting: Wed Jan 1 04:02:16 CET 2014
Ending: Fri Jan 31 22:06:02 CET 2014
Messages: 605

• [BioC] gage and GO analysis   Tingzhu [guest]
  • [BioC] gage and GO analysis   Reema Singh
• [BioC] Where can I download/install old packages like 'org.Rn.eg.db' based on rn4?   Zhi-Qiang Ye
  • [BioC] Where can I download/install old packages like 'org.Rn.eg.db' based on rn4?   Hervé Pagès
    • [BioC] Where can I download/install old packages like 'org.Rn.eg.db' based on rn4?   Zhi-Qiang Ye
• [BioC] ComBat： density.default(gamma.hat[1, ]) : 'x' contains missing values， couldn't eliminate by remove zero variance rows as suggested before   chensujun
• [BioC] CAMERA output to Neutral Monoisotopic Mass   Charles Determan Jr
• [BioC] edgeR complex partial multifactorial design   Gordon K Smyth
• [BioC] EdgeR glm based analysis   Gordon K Smyth
  • [BioC] EdgeR glm based analysis   Reema Singh
    • [BioC] EdgeR glm based analysis   Gordon K Smyth
      • [BioC] EdgeR glm based analysis   Reema Singh
• [BioC] EdgeR Design matrix not of full rank. The following coefficients not estimable errorR   Gordon K Smyth
• [BioC] Using DESeq to test for null ratios other than 1:1   Emily [guest]
  • [BioC] Using DESeq to test for null ratios other than 1:1   Simon Anders
• [BioC] Using EdgeR to test for null ratios other than 1:1   Emily [guest]
  • [BioC] Using EdgeR to test for null ratios other than 1:1   Gordon K Smyth
• [BioC] Using UniProt.ws to retrieve protein features   David_Gomez [guest]
• [BioC] install tcltk   liyue [guest]
  • [BioC] install tcltk   James W. MacDonald
• [BioC] install qvalue   liyue [guest]
  • [BioC] install qvalue   Dan Tenenbaum
    • [BioC] install qvalue   Dan Tenenbaum
  • [BioC] install qvalue   Martin Morgan
• [BioC] RCircos 2D track plot for a small region of genome   Mark Carty [guest]
  • [BioC] RCircos 2D track plot for a small region of genome   Dan Tenenbaum
• [BioC] which one should I choose in DEseq   liyue [guest]
  • [BioC] which one should I choose in DEseq   Simon Anders
• [BioC] which one should I choose in DEGseq   liyue [guest]
• [BioC] makeSPIAdata   David Price
  • [BioC] makeSPIAdata   Tarca, Adi
• [BioC] Parse sequences so they align properly   Josh Banta [guest]
  • [BioC] Parse sequences so they align properly   Hervé Pagès
    • [BioC] Parse sequences so they align properly   Joshua Banta
      • [BioC] Parse sequences so they align properly   Martin Morgan
      • [BioC] Parse sequences so they align properly   Hervé Pagès
      • [BioC] Parse sequences so they align properly   Hervé Pagès
• [BioC] job: head of core facility bioinformatics (Mainz/Germany)   Holger Klein
• [BioC] FDR and Estimated Fragment length   Ryan
• [BioC] Error using oligo package with Affymetrix Arabidopsis Gene ST1.0 array data: paCalls() returns error 'vector would be too long'   Peter Crisp
• [BioC] Design/Contrast for Two-Channel Experimental Setup   Joseph Shaw [guest]
  • [BioC] Design/Contrast for Two-Channel Experimental Setup   Joseph Shaw [guest]
    • [BioC] Design/Contrast for Two-Channel Experimental Setup   Ryan
      • [BioC] Design/Contrast for Two-Channel Experimental Setup   Joseph Shaw
  • [BioC] Design/Contrast for Two-Channel Experimental Setup   Gordon K Smyth
    • [BioC] Design/Contrast for Two-Channel Experimental Setup   Joseph Shaw
      • [BioC] Design/Contrast for Two-Channel Experimental Setup   Gordon K Smyth
      • [BioC] Design/Contrast for Two-Channel Experimental Setup   Joseph Shaw
• [BioC] Inquiry about lumiT function   Neagu Matei Stefan [guest]
  • [BioC] Inquiry about lumiT function   Pan Du
• [BioC] Error in dispersionPlot using cummeRbund   Nancy [guest]
  • [BioC] Error in dispersionPlot using cummeRbund   Loyal A. Goff
    • [BioC] Error in dispersionPlot using cummeRbund   Yanxiang Shi
      • [BioC] Error in dispersionPlot using cummeRbund   Yanxiang Shi
• [BioC] Help needed: extracting raw intensity values from Affy   Assa Yeroslaviz
  • [BioC] Help needed: extracting raw intensity values from Affy   shweta bagewadi
  • [BioC] Help needed: extracting raw intensity values from Affy   shweta bagewadi
• [BioC] [MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?   김종환
  • [BioC] [MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?   Lukas Chavez
    • [BioC] [MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?   김종환
• [BioC] miRBase   Shantanu Karkare [guest]
  • [BioC] miRBase   Dan Tenenbaum
    • [BioC] miRBase   Shantanu Karkare
• [BioC] Fwd: GWASTools   Stephanie M. Gogarten
• [BioC] EdgeR multi-factor testing questions   Yanzhu [guest]
  • [BioC] EdgeR multi-factor testing questions   Gordon K Smyth
• [BioC] Job opening: Staff Scientist – Computational Biology and Bioinformatics – Massachusetts General Hospital, Boston, MA, USA   Wittner, Ben, Ph.D.
• [BioC] Most efficient way to compute width of overlap of multiple features   Vince S. Buffalo
  • [BioC] Most efficient way to compute width of overlap of multiple features   Charles Berry
    • [BioC] Most efficient way to compute width of overlap of multiple features   Michael Lawrence
      • [BioC] Most efficient way to compute width of overlap of multiple features   Charles Berry
      • [BioC] Most efficient way to compute width of overlap of multiple features   Michael Lawrence
• [BioC] ensemblVEP, variant_effect_predictor versions and release schedule   Thomas Sandmann
  • [BioC] ensemblVEP, variant_effect_predictor versions and release schedule   Valerie Obenchain
    • [BioC] ensemblVEP, variant_effect_predictor versions and release schedule   Valerie Obenchain
• [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Noa Henig
  • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
    • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Noa Henig
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Simon Anders
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Noa Henig
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
      • [BioC] DESeq2 high fold change values for comparison of samples with zero counts   Michael Love
• [BioC] Extracting protein sequence associated to UCSC transcript id   rcaloger
  • [BioC] Extracting protein sequence associated to UCSC transcript id   Michael Lawrence
    • [BioC] Extracting protein sequence associated to UCSC transcript id   rcaloger
      • [BioC] Extracting protein sequence associated to UCSC transcript id   Michael Lawrence
      • [BioC] Extracting protein sequence associated to UCSC transcript id   rcaloger
      • [BioC] Extracting protein sequence associated to UCSC transcript id   Hervé Pagès
      • [BioC] Extracting protein sequence associated to UCSC transcript id   Marc Carlson
      • [BioC] Extracting protein sequence associated to UCSC transcript id   Michael Lawrence
      • [BioC] Extracting protein sequence associated to UCSC transcript id   rcaloger
      • [BioC] Extracting protein sequence associated to UCSC transcript id   James W. MacDonald
      • [BioC] Extracting protein sequence associated to UCSC transcript id   rcaloger
      • [BioC] Extracting protein sequence associated to UCSC transcript id   Marc Carlson
      • [BioC] Extracting protein sequence associated to UCSC transcript id   Marc Carlson
• [BioC] Normalizing Affy Almac Xcel Array Data from CEL files   Wei Chen [guest]
  • [BioC] Normalizing Affy Almac Xcel Array Data from CEL files   James W. MacDonald
    • [BioC] Normalizing Affy Almac Xcel Array Data from CEL files   Dr Wei Chen
      • [BioC] Normalizing Affy Almac Xcel Array Data from CEL files   James W. MacDonald
  • [BioC] Normalizing Affy Almac Xcel Array Data from CEL files   cstrato
• [BioC] Gviz UcscTrack error   Anna Sawicka [guest]
  • [BioC] Gviz UcscTrack error   Hahne, Florian
    • [BioC] Gviz UcscTrack error   Anna Sawicka
• [BioC] Problem with BAM header in GAlignments   Taylor, Sean D
  • [BioC] Problem with BAM header in GAlignments   Taylor, Sean D
  • [BioC] Problem with BAM header in GAlignments   Martin Morgan
    • [BioC] Problem with BAM header in GAlignments   Taylor, Sean D
      • [BioC] Problem with BAM header in GAlignments   Martin Morgan
      • [BioC] Problem with BAM header in GAlignments   Taylor, Sean D
• [BioC] Retrieving Adjusted Individual Channel Intensities   Joseph Shaw [guest]
  • [BioC] Retrieving Adjusted Individual Channel Intensities   James W. MacDonald
• [BioC] Question about best analysis method for a complex array expriment design   Agnes Paquet
• [BioC] EximiR - Limma - miRCURY LNA - Exiqon   Paolo Kunderfranco
• EdgeR multi-factâ or testing questions   Yanzhu [guest]
• [BioC] VCF as custom variant annotation database   Francesco Lescai
  • [BioC] VCF as custom variant annotation database   Valerie Obenchain
    • [BioC] VCF as custom variant annotation database   Francesco Lescai
• [BioC] EdgeR multi-factor testing question   Yanzhu [guest]
  • [BioC] EdgeR multi-factor testing question   Gordon K Smyth
• [BioC] BiocStyle short header   Andrzej Oleś
  • [BioC] BiocStyle short header   Martin Morgan
    • [BioC] BiocStyle short header   Bernd Fischer
• [BioC] Querying a HDF5 database from R   James Mahon [guest]
  • [BioC] Querying a HDF5 database from R   Bernd Fischer
• [BioC] Reading by column   Hajas, Wayne
  • [BioC] Reading by column   Nathaniel Hayden
    • [BioC] Reading by column   Hajas, Wayne
      • [BioC] Reading by column   Bernd Fischer
    • [BioC] Reading by column   Hajas, Wayne
• [BioC] Question about best analysis method for a complex array experiment design   Gordon K Smyth
• [BioC] package installation   array chip
  • [BioC] package installation   James W. MacDonald
• [BioC] Multi-level experiments   Yu Cai [guest]
  • [BioC] Multi-level experiments   Dario Strbenac
• [BioC] diffbind question : bSubControl with DEseq   Rory Stark
• [BioC] DESeq nbinomGLMTest specific comparisons   James Floyd
  • [BioC] DESeq nbinomGLMTest specific comparisons   Ryan C. Thompson
    • [BioC] DESeq nbinomGLMTest specific comparisons   James Floyd
    • [BioC] GLM common and trended dispersion EdgeR.   Reema Singh
      • [BioC] GLM common and trended dispersion EdgeR.   Ryan C. Thompson
      • [BioC] GLM common and trended dispersion EdgeR.   Reema Singh
• [BioC] annotation of a probe in hgu133plus2   Mayte Suarez-Farinas
  • [BioC] annotation of a probe in hgu133plus2   James W. MacDonald
    • [BioC] annotation of a probe in hgu133plus2   James W. MacDonald
      • [BioC] annotation of a probe in hgu133plus2   Mayte Suarez-Farinas
• [BioC] Annotate package not working   Ryan C. Thompson
  • [BioC] Annotate package not working   Dan Tenenbaum
  • [BioC] Annotate package not working   James W. MacDonald
    • [BioC] Annotate package not working   Ryan C. Thompson
      • [BioC] Annotate package not working   Dan Tenenbaum
      • [BioC] Annotate package not working   Ryan C. Thompson
      • [BioC] Annotate package not working   Martin Morgan
      • [BioC] Annotate package not working   Ryan C. Thompson
• [BioC] Best way to remove noise from dataset.   Fenton Christopher Graham
  • [BioC] Best way to remove noise from dataset.   Arnar Flatberg
• [BioC] DEXSeq analysis for paired samples   Philip Jonsson
  • [BioC] DEXSeq analysis for paired samples   Simon Anders
• [BioC] R pathview and mouse   Luo Weijun
• [BioC] biomaRt: retrieve exon sequence, start and end positions   Tim Smith
  • [BioC] biomaRt: retrieve exon sequence, start and end positions   Steffen Durinck
• [BioC] limma - normalizeBetweenArrays function   MIKE STARKEY
  • [BioC] limma - normalizeBetweenArrays function   Gordon K Smyth
• [BioC] Q-values way smaller than P-values! Is that kosher?   Joshua Banta
  • [BioC] Q-values way smaller than P-values! Is that kosher?   Joshua Banta [guest]
  • [BioC] Q-values way smaller than P-values! Is that kosher?   Michael Love
    • [BioC] Q-values way smaller than P-values! Is that kosher?   Gordon K Smyth
      • [BioC] Q-values way smaller than P-values! Is that kosher?   Joshua Banta
      • [BioC] Q-values way smaller than P-values! Is that kosher?   Tim Triche, Jr.
      • [BioC] Q-values way smaller than P-values! Is that kosher?   Tim Triche, Jr.
      • [BioC] Q-values way smaller than P-values! Is that kosher?   Gordon K Smyth
• [BioC] GLM common and trended dispersion EdgeR   Gordon K Smyth
  • [BioC] GLM common and trended dispersion EdgeR   Reema Singh
• [BioC] GenomicFeatures support for UCSC Microbial Genome Browser   Olusegun Oshota [guest]
  • [BioC] [devteam-bioc] GenomicFeatures support for UCSC Microbial Genome Browser   Hervé Pagès
• [BioC] EdgeR design question?   joseph
  • [BioC] EdgeR design question?   Gordon K Smyth
    • [BioC] EdgeR design question?   joseph
      • [BioC] EdgeR design question?   Gordon K Smyth
• [BioC] 'xps' package installation fails with ROOT installed from the Ubuntu (13.10) repositories   Barry Garchow
  • [BioC] 'xps' package installation fails with ROOT installed from the Ubuntu (13.10) repositories   cstrato
    • [BioC] 'xps' package installation fails with ROOT installed from the Ubuntu (13.10) repositories   Barry Garchow
      • [BioC] 'xps' package installation fails with ROOT installed from the Ubuntu (13.10) repositories   cstrato
• [BioC] question edgeR multifactorial design   David Rengel
  • [BioC] question edgeR multifactorial design   Gordon K Smyth
• [BioC] An introductory course to RNA-seq at MBC Via Nizza 52, Torino, Italy, 25-27 March 2014   rcaloger
• [BioC] [job offer phd position]   Sonja Haenzelmann [guest]
• [BioC] DEseq2 metagenomic analysis without replicates   Kristina Fontanez [guest]
  • [BioC] DEseq2 metagenomic analysis without replicates   Steve Lianoglou
  • [BioC] DEseq2 metagenomic analysis without replicates   Simon Anders
    • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Simon Anders
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Simon Anders
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Simon Anders
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Michael Love
      • [BioC] DEseq2 metagenomic analysis without replicates   Simon Anders
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Michael Love
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Michael Love
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Kristina M Fontanez
      • [BioC] DEseq2 metagenomic analysis without replicates   Michael Love
• [BioC] DESeq: multi-factors testing questions   Yanzhu [guest]
  • [BioC] DESeq: multi-factors testing questions   Michael Love
• [BioC] AllelicImbalance with VCFs?   Tim Triche, Jr.
  • [BioC] AllelicImbalance with VCFs?   Jesper Robert Gadin
    • [BioC] AllelicImbalance with VCFs?   Jesper Robert Gadin
      • [BioC] AllelicImbalance with VCFs?   Valerie Obenchain
      • [BioC] AllelicImbalance with VCFs?   Valerie Obenchain
• [BioC] using frma and brainarray cdf on exon arrays   Ty Thomson
  • [BioC] using frma and brainarray cdf on exon arrays   Matthew McCall
    • [BioC] using frma and brainarray cdf on exon arrays   Ty Thomson
  • [BioC] using frma and brainarray cdf on exon arrays   Steve Piccolo
    • [BioC] using frma and brainarray cdf on exon arrays   Ty Thomson
      • [BioC] using frma and brainarray cdf on exon arrays   Steve Piccolo
      • [BioC] using frma and brainarray cdf on exon arrays   Ty Thomson
      • [BioC] using frma and brainarray cdf on exon arrays   Benilton Carvalho
      • [BioC] using frma and brainarray cdf on exon arrays   Matthew McCall
      • [BioC] using frma and brainarray cdf on exon arrays   Steve Piccolo
• [BioC] EdgeR for proteomics data   Phinney, Brett
  • [BioC] EdgeR for proteomics data   Ryan
    • [BioC] EdgeR for proteomics data   Pekka Kohonen
• [BioC] Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.   Thornton, Matthew
  • [BioC] Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.   James W. MacDonald
• [BioC] multiple groups time course RNA Seq LIMMA   Riba Michela
  • [BioC] multiple groups time course RNA Seq LIMMA   Gordon K Smyth
    • [BioC] multiple groups time course RNA Seq LIMMA   Riba Michela
• [BioC] extracting transcripts   Jahn Davik
  • [BioC] extracting transcripts   James W. MacDonald
• [BioC] retrieving LD between two known SNPs with rsID   Francesco Lescai
  • [BioC] retrieving LD between two known SNPs with rsID   Valerie Obenchain
• [BioC] ChIPpeakAnno: TSS at - strand   Zhu, Lihua (Julie)
  • [BioC] ChIPpeakAnno: TSS at - strand   Zhu, Lihua (Julie)
    • [BioC] ChIPpeakAnno: TSS at - strand   Yu, Guangchuang
      • [BioC] ChIPpeakAnno: TSS at - strand   Ou, Jianhong
• [BioC] unable to install biocLite or BiocInstaller   Naomi Altman
  • [BioC] unable to install biocLite or BiocInstaller   Benilton Carvalho
  • [BioC] unable to install biocLite or BiocInstaller   Vincent Carey
    • [BioC] unable to install biocLite or BiocInstaller   Steve Lianoglou
      • [BioC] unable to install biocLite or BiocInstaller   naomi at stat.psu.edu
• [BioC] estimating size factors in DESeq produces warnings   Assa Yeroslaviz
  • [BioC] estimating size factors in DESeq produces warnings   Simon Anders
• [BioC] help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip   Abhishek Pratap
  • [BioC] help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip   Stephanie M. Gogarten
    • [BioC] help with analysis of genotyping data from Illumina HumanOmni5-4v1_B chip   Abhishek Pratap
• [BioC] oligo read.celfiles() error   Guest [guest]
  • [BioC] oligo read.celfiles() error   Kasoji, Manjula (NIH/NCI) [C]
• [BioC] I need help making a dcf seed file to encapsulate a genome assembly im using.   Hervé Pagès
  • [BioC] I need help making a dcf seed file to encapsulate a genome assembly im using.   ashteyma at andrew.cmu.edu
• [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   Lei Huang [guest]
  • [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   James W. MacDonald
    • [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   cstrato
  • [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   James W. MacDonald
    • [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   Huang, Lei [BSD] - CRI
    • [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   James W. MacDonald
  • [BioC] Missing probesets when creating Affymetrix GeneChip miRNA 4.0 CDF package using makecdfenv package   Isaac Neuhaus
• [BioC] makeTranscriptDbFromUCSC   Georg Otto
  • [BioC] makeTranscriptDbFromUCSC   Georg Otto
• [BioC] [MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `   Pierre Lindenbaum
  • [BioC] [MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, new_stop)) `   Matthias Lienhard
• [BioC] makeTranscriptDbFromUCSC() error   Chris Cabanski
  • [BioC] makeTranscriptDbFromUCSC() error   Chris Cabanski
• [BioC] Research questions that are answered using MotifDb   T M
  • [BioC] Find enriched GO terms, given a list of GO terms of interest and background GO terms   JJ [guest]
    • [BioC] Find enriched GO terms, given a list of GO terms of interest and background GO terms   Adrian Alexa
    • [BioC] Find enriched GO terms, given a list of GO terms of interest and background GO terms   JJ Chai
• [BioC] finding a very large number of false positives using edgeR   Blum, Charles
  • [BioC] finding a very large number of false positives using edgeR   Steve Lianoglou
    • [BioC] finding a very large number of false positives using edgeR   Blum, Charles
      • [BioC] finding a very large number of false positives using edgeR   Steve Lianoglou
  • [BioC] finding a very large number of false positives using edgeR   Gordon K Smyth
• [BioC] exomeCopy tutorial steps   Brett Spurrier
  • [BioC] exomeCopy tutorial steps   Vincent Carey
    • [BioC] exomeCopy tutorial steps   Michael Love
• [BioC] makeGappedAlignmentPairs for broken pairs   Ido Tamir
  • [BioC] makeGappedAlignmentPairs for broken pairs   Valerie Obenchain
    • [BioC] makeGappedAlignmentPairs for broken pairs   Ido Tamir
      • [BioC] makeGappedAlignmentPairs for broken pairs   Valerie Obenchain
• [BioC] fRMA for Gene ST arrays   maria
  • [BioC] fRMA for Gene ST arrays   Matthew McCall
• [BioC] Cluster stability/robustness   Rafi [guest]
  • [BioC] Cluster stability/robustness   James W. MacDonald
    • [BioC] Cluster stability/robustness   rafi A
      • [BioC] Cluster stability/robustness   James W. MacDonald
  • [BioC] Cluster stability/robustness   Wolfgang Huber
• [BioC] biomaaRt error: Extra content at the end of the document   Hari Easwaran
  • [BioC] biomaaRt error: Extra content at the end of the document   Steffen Durinck
    • [BioC] biomaaRt error: Extra content at the end of the document   Hari Easwaran
• [BioC] ComBat: Error when including numerical covariates in model (numCovs)   Johnson, William Evan
  • [BioC] ComBat: Error when including numerical covariates in model (numCovs)   Jordan Ramsey
  • [BioC] ComBat: Error when including numerical covariates in model (numCovs)   Jordan Ramsey
  • [BioC] ComBat: Error when including numerical covariates in model (numCovs)   Johnson, William Evan
• [BioC] pathway analysis by SPIA using SPIA package vs graphite package   array chip
  • [BioC] pathway analysis by SPIA using SPIA package vs graphite package   array chip
• [BioC] Inquiries on recommended design formulae for various experiments   Yoong [guest]
  • [BioC] Inquiries on recommended design formulae for various experiments   Michael Love
• [BioC] pre-ranked GSEA within R: options?   Daniel Schmolze
• [BioC] DEXSeq - identical p-values for all exons in a gene   KP [guest]
  • [BioC] DEXSeq - identical p-values for all exons in a gene   Steve Lianoglou
    • [BioC] DEXSeq - identical p-values for all exons in a gene   Pillman, Katherine (Health)
      • [BioC] DEXSeq - identical p-values for all exons in a gene   Dario Strbenac
      • [BioC] DEXSeq - identical p-values for all exons in a gene   Simon Anders
      • [BioC] DEXSeq - identical p-values for all exons in a gene   Simon Anders
    • [BioC] DEXSeq - identical p-values for all exons in a gene   Pillman, Katherine (Health)
    • [BioC] DEXSeq - identical p-values for all exons in a gene   Pillman, Katherine (Health)
      • [BioC] DEXSeq - identical p-values for all exons in a gene   Simon Anders
      • [BioC] DEXSeq - identical p-values for all exons in a gene   Pillman, Katherine (Health)
• [BioC] pre-ranked GSEA within R?   Daniel Schmolze
  • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Garcia Manteiga Jose Manuel
    • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Michael Love
      • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Garcia Manteiga Jose Manuel
      • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Michael Love
    • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Gordon K Smyth
      • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Jose Garcia
      • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Gordon K Smyth
      • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Jose Garcia
      • [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?   Gordon K Smyth
  • [BioC] pre-ranked GSEA within R?   Pekka Kohonen
    • [BioC] pre-ranked GSEA within R?   Leif Väremo
      • [BioC] pre-ranked GSEA within R?   Pekka Kohonen
• [BioC] Can subjunc use splice sites from a reference annotation (i.e. GTF file)?   Ryan C. Thompson
  • [BioC] Can subjunc use splice sites from a reference annotation (i.e. GTF file)?   Wei Shi
• [BioC] Labeling BAM files in Cufflinks/Cuffdiff input   Sindre Lee
• [BioC] DESeq2: NA on padj column when doing bonferroni   David Rengel
  • [BioC] DESeq2: NA on padj column when doing bonferroni   Kristina M Fontanez
    • [BioC] DESeq2: NA on padj column when doing bonferroni   David Rengel
      • [BioC] DESeq2: NA on padj column when doing bonferroni   Garcia Manteiga Jose Manuel
      • [BioC] DESeq2: NA on padj column when doing bonferroni   Kristina M Fontanez
      • [BioC] DESeq2: NA on padj column when doing bonferroni   David Rengel
      • [BioC] DESeq2: NA on padj column when doing bonferroni   Kristina M Fontanez
      • [BioC] DESeq2: NA on padj column when doing bonferroni   Michael Love
      • [BioC] DESeq2: NA on padj column when doing bonferroni   David Rengel
      • [BioC] DESeq2: NA on padj column when doing bonferroni   David Rengel
• [BioC] edgeR FC calculation question   Lana Schaffer
  • [BioC] edgeR FC calculation question   Ryan C. Thompson
• [BioC] Error installing development version of DESeq2   Kristina M Fontanez
  • [BioC] Error installing development version of DESeq2   Dan Tenenbaum
    • [BioC] Error installing development version of DESeq2   Kristina M Fontanez
    • [BioC] Error installing development version of DESeq2   Steve Lianoglou
      • [BioC] Error installing development version of DESeq2   Kristina M Fontanez
      • [BioC] Error installing development version of DESeq2   Steve Lianoglou
      • [BioC] Error installing development version of DESeq2   Kristina M Fontanez
      • [BioC] Error installing development version of DESeq2   Steve Lianoglou
      • [BioC] Error installing development version of DESeq2   Kristina M Fontanez
• [BioC] RCytoscape: tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small   Paul Shannon
• [BioC] tudelft.CytoscapeRPC.CytoscapeRPCCallHandler: width is too small   Paul Shannon
• [BioC] pre-ranked GSEA within R? + Best DESeq2/limma-voom   Gordon K Smyth
• [BioC] obtaining the counts after batch effect removal   Gilgi [guest]
  • [BioC] obtaining the counts after batch effect removal   Michael Love
    • [BioC] obtaining the counts after batch effect removal   Michael Love
      • [BioC] obtaining the counts after batch effect removal   Gilgi Friedlander
      • [BioC] obtaining the counts after batch effect removal   Wolfgang Huber
      • [BioC] obtaining the counts after batch effect removal   Gilgi Friedlander
• [BioC] Problem when trying to use \'affy\' package   Kaj Chokeshaiusaha [guest]
  • [BioC] Problem when trying to use \'affy\' package   James W. MacDonald
    • [BioC] Problem when trying to use \'affy\' package   Kaj
      • [BioC] Problem when trying to use \'affy\' package   James W. MacDonald
      • [BioC] Problem when trying to use \'affy\' package   James W. MacDonald
      • [BioC] Problem when trying to use \'affy\' package   Kaj
      • [BioC] Problem when trying to use \'affy\' package   James W. MacDonald
• [BioC] Problem with PMcorrection and Summarization   Kaj Chokeshaiusaha [guest]
• [BioC] IPPD model fit   Yuri Galachyants
• [BioC] Trouble installing BiocGenerics   Andreas Leha
  • [BioC] Trouble installing BiocGenerics   Vincent Carey
    • [BioC] Trouble installing BiocGenerics   Andreas Leha
• [BioC] GOstats, query between the GO set from geneIdsByCategory and the GO set from org.Ce.egGO   余淼
  • [BioC] GOstats, query between the GO set from geneIdsByCategory and the GO set from org.Ce.egGO   Dan Du
• [BioC] conditional merge of duplicated rows in data.frame   Ninni Nahm [guest]
  • [BioC] conditional merge of duplicated rows in data.frame   Martin Morgan
    • [BioC] conditional merge of duplicated rows in data.frame   Ninni Nahm
• [BioC] help with array based microRNA data analysis   Abhishek Pratap
  • [BioC] help with array based microRNA data analysis   Paul Geeleher
    • [BioC] help with array based microRNA data analysis   Abhishek Pratap
• [BioC] pathview vectorized output?   Luo Weijun
• [BioC] FLowClust/FLowCore   Vijay [guest]
  • [BioC] FLowClust/FLowCore   Mike
• [BioC] BiomaRt Ensembl RefSeq query error   Georg Otto
  • [BioC] BiomaRt Ensembl RefSeq query error   Georg Otto
    • [BioC] BiomaRt Ensembl RefSeq query error   Davis, Wade
      • [BioC] BiomaRt Ensembl RefSeq query error   Georg Otto
• [BioC] Question about quantile normalization and NA value   H at mamba.fhcrc.org
  • [BioC] Question about quantile normalization and NA value   Steve Lianoglou
  • [BioC] Question about quantile normalization and NA value   godahajime
    • [BioC] Question about quantile normalization and NA value   Steve Lianoglou
  • [BioC] Question about quantile normalization and NA value   Gordon K Smyth
    • [BioC] Question about quantile normalization and NA value   Ben Bolstad
  • [BioC] Question about quantile normalization and NA value   godahajime
• [BioC] Problem installing BiocGenerics package   Eric Lucas [guest]
  • [BioC] [devteam-bioc] Problem installing BiocGenerics package   Dan Tenenbaum
    • [BioC] [devteam-bioc] Problem installing BiocGenerics package   Eric Lucas
• [BioC] Get actual coordinates for the predicted loci   Joel Rodríguez-Medina [guest]
  • [BioC] Get actual coordinates for the predicted loci   Tom Hardcastle
• [BioC] how to extract probes for a probeset from PdInfo database?   Hooiveld, Guido
  • [BioC] how to extract probes for a probeset from PdInfo database?   Wu, Di
    • [BioC] how to extract probes for a probeset from PdInfo database?   Hooiveld, Guido
  • [BioC] how to extract probes for a probeset from PdInfo database?   Benilton Carvalho
• [BioC] Voom and removing batch effect   Heather Estrella
  • [BioC] Voom and removing batch effect   Ryan C. Thompson
• [BioC] ChIPpeakAnno: 6-way venn diagram   Zhu, Lihua (Julie)
• [BioC] rMAT install error   周在威
• [BioC] get promoter regions (bed format) of genes hg19   Ninni Nahm [guest]
  • [BioC] get promoter regions (bed format) of genes hg19   Valerie Obenchain
    • [BioC] get promoter regions (bed format) of genes hg19   Harris A. Jaffee
• [BioC] bsmooth and bsseq for RRBS   Gilgi [guest]
  • [BioC] bsmooth and bsseq for RRBS   Tim Triche, Jr.
    • [BioC] bsmooth and bsseq for RRBS   Gilgi Friedlander
• [BioC] RRBS question   Alex Gutteridge
  • [BioC] RRBS question   Kasper Daniel Hansen
    • [BioC] RRBS question   Alex Gutteridge
      • [BioC] RRBS question   Gilgi Friedlander
  • [BioC] RRBS question   Tim Triche, Jr.
• [BioC] Design matrix in Combat algorithm   Neagu Matei Stefan [guest]
  • [BioC] Design matrix in Combat algorithm   Johnson, William Evan
• [BioC] A relevant petition   Vincent Detours [guest]
• [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Dimitra Alexopoulou
  • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Michael Love
    • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Dimitra Alexopoulou
  • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   James W. MacDonald
    • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Jason Hackney
      • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Dimitra Alexopoulou
      • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Gabriel Becker
      • [BioC] [ReportingTools] and DESeq2 results, publish DESeqDataSet using resultsNames other than the default   Jason Hackney
• [BioC] maQualityPlots: cannot coerce type 'S4' to vector of type 'double'   Saket Choudhary
• [BioC] Summer Internship at Genentech   Jessica Larson
• [BioC] Odd contrast; does it make statistical sense?   Ryan C. Thompson
  • [BioC] Odd contrast; does it make statistical sense?   Gordon K Smyth
    • [BioC] Odd contrast; does it make statistical sense?   Aaron Mackey
      • [BioC] Odd contrast; does it make statistical sense?   Ryan
      • [BioC] Odd contrast; does it make statistical sense?   Gordon K Smyth
      • [BioC] Odd contrast; does it make statistical sense?   Aaron Mackey
      • [BioC] Odd contrast; does it make statistical sense?   Gordon K Smyth
      • [BioC] questions on edgeR package   Ming Yi
      • [BioC] questions on edgeR package   Gordon K Smyth
      • [BioC] questions on edgeR package   Dario Strbenac
      • [BioC] questions on edgeR package   Ming Yi
      • [BioC] questions on edgeR package   Ming Yi
      • [BioC] questions on edgeR package   Gordon K Smyth
      • [BioC] questions on edgeR package   Ming Yi
      • [BioC] questions on edgeR package   Gordon K Smyth
      • [BioC] questions on edgeR package   Steve Lianoglou
      • [BioC] questions on edgeR package   Gordon K Smyth
      • [BioC] questions on edgeR package   Steve Lianoglou
      • [BioC] questions on edgeR package   Ming Yi
    • [BioC] Odd contrast; does it make statistical sense?   Gordon K Smyth
      • [BioC] Odd contrast; does it make statistical sense?   Ryan
• [BioC] paCalls() in oligo package fails for exon arrays (Error in normalizeSingleBracketSubscript)   Maria Rodrigo-Domingo [guest]
  • [BioC] paCalls() in oligo package fails for exon arrays (Error in normalizeSingleBracketSubscript)   Benilton Carvalho
    • [BioC] paCalls() in oligo package fails for exon arrays (Error in normalizeSingleBracketSubscript)   Maria Rodrigo-Domingo
• [BioC] DBChIP errors   mali salmon
• [BioC] maQualityPlots: cannot coerce type 'S4' to vector of type   Agnes Paquet
• [BioC] Affymetrix HTA 2 array analysis   Elena Serrano
• [BioC] Agi4x44Preprocess - error on read.AgilentFE fucntion   Amanda F A Riccardi [guest]
  • [BioC] Agi4x44Preprocess - error on read.AgilentFE fucntion   James W. MacDonald
  • [BioC] Agi4x44Preprocess - error on read.AgilentFE fucntion   James W. MacDonald
    • [BioC] Agi4x44Preprocess - error on read.AgilentFE fucntion   amandafassis at usp.br
• [BioC] Error reading imputed file using snpStats package   francesca casalino
  • [BioC] Error reading imputed file using snpStats package   francesca casalino
  • [BioC] Error reading imputed file using snpStats package   Vincent Carey
    • [BioC] Error reading imputed file using snpStats package   francesca casalino
• [BioC] Clusplot - changing cluster labels   Peterson, Leif
• [BioC] pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0   Guilherme Rocha
  • [BioC] pdInfoBuilder fails on Affy's GeneChip Human Transcriptome Array 2.0   James W. MacDonald
• [BioC] The ambiguous alignment examples in findMateAlignment don't have to be dumped   yun YAN
  • [BioC] The ambiguous alignment examples in findMateAlignment don't have to be dumped   Hervé Pagès
    • [BioC] The ambiguous alignment examples in findMateAlignment don't have to be dumped   yun YAN
      • [BioC] The ambiguous alignment examples in findMateAlignment don't have to be dumped   Hervé Pagès
• [BioC] genefilter kOverA filter by range   Kristina M Fontanez
  • [BioC] genefilter kOverA filter by range   James W. MacDonald
    • [BioC] genefilter kOverA filter by range   Kristina M Fontanez
      • [BioC] genefilter kOverA filter by range   James W. MacDonald
      • [BioC] genefilter kOverA filter by range   Kristina M Fontanez
• [BioC] 2 issues about enriched gene sets via Roast   julie.leonard at syngenta.com
  • [BioC] 2 issues about enriched gene sets via Roast   julie.leonard at syngenta.com
  • [BioC] 2 issues about enriched gene sets via Roast   Gordon K Smyth
    • [BioC] 2 issues about enriched gene sets via Roast   julie.leonard at syngenta.com
  • [BioC] 2 issues about enriched gene sets via Roast   Gordon K Smyth
• [BioC] beadarray: mRNA QC help   Abhishek Pratap
  • [BioC] beadarray: mRNA QC help   Levi Waldron
    • [BioC] beadarray: mRNA QC help   Abhishek Pratap
      • [BioC] beadarray: mRNA QC help   Abhishek Pratap
  • [BioC] beadarray: mRNA QC help   Levi Waldron
• [BioC] EBSeq Results Affected By Outlying Values   Dario Strbenac
• [BioC] Follow-up: Multiple comparisons using contrast   Yoong [guest]
  • [BioC] Follow-up: Multiple comparisons using contrast   Michael Love
• [BioC] Limma design and contrast matrix question.   Thornton, Matthew
  • [BioC] Limma design and contrast matrix question.   Dario Strbenac
    • [BioC] Limma design and contrast matrix question.   Thornton, Matthew
  • [BioC] Limma design and contrast matrix question.   James W. MacDonald
    • [BioC] Limma design and contrast matrix question.   Thornton, Matthew
      • [BioC] Limma design and contrast matrix question.   James W. MacDonald
• [BioC] GLM design matrix not symmetric   Michael Moore
  • [BioC] GLM design matrix not symmetric   Gordon K Smyth
    • [BioC] GLM design matrix not symmetric   Gordon K Smyth
• [BioC] edgeR - common dispersion and BCV   Avinash S
• [BioC] restoring lattice-like format in flowViz?   David Ornelles [guest]
  • [BioC] restoring lattice-like format in flowViz?   Mike
    • [BioC] restoring lattice-like format in flowViz?   D Ornelles
• [BioC] DESeq2 pitfalls of rlog transformation   Kristina M Fontanez
  • [BioC] DESeq2 pitfalls of rlog transformation   Michael Love
    • [BioC] DESeq2 pitfalls of rlog transformation   Kristina M Fontanez
  • [BioC] DESeq2 pitfalls of rlog transformation   Kristina M Fontanez
• [BioC] How to use ALLR to calculate motifDistance   Ou, Jianhong
• [BioC] non-BiomaRt die   Waqasuddin Khan [guest]
  • [BioC] non-BiomaRt die   Dan Tenenbaum
• [BioC] ComBat error message   Ingrid Dahlman [guest]
• [BioC] Error Using DESeq with HTSeq-Count   Xiaoyu Liang
  • [BioC] Error Using DESeq with HTSeq-Count   Michael Love
    • [BioC] Error Using DESeq with HTSeq-Count   Xiaoyu Liang
      • [BioC] Error Using DESeq with HTSeq-Count   Devon Ryan
      • [BioC] Error Using DESeq with HTSeq-Count   Michael Love
      • [BioC] Error Using DESeq with HTSeq-Count   Xiaoyu Liang
• [BioC] Multiple comparisons: inquiries on level factors and wording used in resultsNames   Yoong [guest]
  • [BioC] Multiple comparisons: inquiries on level factors and wording used in resultsNames   Michael Love
• [BioC] problem in getVarianceStabilizedData   Suparna Mitra
  • [BioC] problem in getVarianceStabilizedData   Michael Love
    • [BioC] problem in getVarianceStabilizedData   Suparna Mitra
• [BioC] Tool inqured to analysis array expression and cell line screening data   Ran [guest]
  • [BioC] Tool inqured to analysis array expression and cell line screening data   Steve Lianoglou
• [BioC] which dispersion to choose   Ruprecht Kathrin
  • [BioC] which dispersion to choose   Gordon K Smyth
• [BioC] EdgeR multi-factors testing questions   Yanzhu [guest]
  • [BioC] EdgeR multi-factors testing questions   Ryan C. Thompson
  • [BioC] EdgeR multi-factors testing questions   Yanzhu [guest]
  • [BioC] EdgeR multi-factors testing questions   Gordon K Smyth
• [BioC] Save top genes used in plotMDS (edgeR)   María Jesús García
  • [BioC] Save top genes used in plotMDS (edgeR)   Gordon K Smyth
• [BioC] Gviz pacakge   Hahne, Florian
  • [BioC] Gviz pacakge   Hahne, Florian
• [BioC] howto map HuEx-1_0-st-v2 transcript_cluster_id's to gene symbols   Stephane Plaisance | VIB |
  • [BioC] howto map HuEx-1_0-st-v2 transcript_cluster_id's to gene symbols   Vincent Carey
    • [BioC] howto map HuEx-1_0-st-v2 transcript_cluster_id's to gene symbols   Vincent Carey
      • [BioC] howto map HuEx-1_0-st-v2 transcript_cluster_id's to gene symbols   Vincent Carey
    • [BioC] howto map HuEx-1_0-st-v2 transcript_cluster_id's to gene symbols   Jeremy Ng
• [BioC] limma and Volcano Plots   Saket Choudhary
  • [BioC] limma and Volcano Plots   Saket Choudhary
  • [BioC] limma and Volcano Plots   Saket Choudhary
  • [BioC] limma and Volcano Plots   Gordon K Smyth
• [BioC] FlowCore: problem with reading and writing fcs files   Maria Chikina [guest]
  • [BioC] FlowCore: problem with reading and writing fcs files   Mike
• [BioC] DiffBind Questions   Rory Stark
• [BioC] Multifactorial edgeR GLM design question (contrast that I should make)   Zhihao Tan
  • [BioC] Multifactorial edgeR GLM design question (contrast that I should make)   James W. MacDonald
    • [BioC] Multifactorial edgeR GLM design question (contrast that I should make)   Zhihao Tan
    • [BioC] Multifactorial edgeR GLM design question (contrast that I should make)   James W. MacDonald
• [BioC] DESeq2 - working with partial replicates   Avinash S
  • [BioC] DESeq2 - working with partial replicates   Michael Love
    • [BioC] DESeq2 - working with partial replicates   Avinash S
    • [BioC] DESeq2 - input data questions   Ming Yi
      • [BioC] DESeq2 - input data questions   Michael Love
      • [BioC] DESeq2 - input data questions   Ming Yi
    • [BioC] edgeR   Jahn Davik [guest]
      • [BioC] edgeR   Gordon K Smyth
      • [BioC] edgeR   Jahn Davik
      • [BioC] edgeR   Jahn Davik
• [BioC] ggplot2 error   Alyaa Mahmoud
  • [BioC] ggplot2 error   Alyaa Mahmoud
    • [BioC] ggplot2 error   Steve Lianoglou
      • [BioC] ggplot2 error   Alyaa Mahmoud
• [BioC] EdgeR plotSmear varied size fo de.tag points   Dave Gerrard
  • [BioC] EdgeR plotSmear varied size fo de.tag points   Gordon K Smyth
    • [BioC] EdgeR plotSmear varied size fo de.tag points   Gordon K Smyth
• [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR   Marco [guest]
  • [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR   Ryan
    • [BioC] Defining the model matrix for a multi-factorial design with interactions - edgeR   Marco Pegoraro
• [BioC] calling aberrations after segmentation with \"copynumber\" package   Gabriele Zoppoli [guest]
• [BioC] Unit tests with DNAString objects   Jonathon Hill [guest]
  • [BioC] Unit tests with DNAString objects   Hervé Pagès
• [BioC] Pathview with minor species   Luo Weijun
• [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet   Dale Watkins
  • [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet   Kasper Daniel Hansen
    • [BioC] Minfi "mapToGenome" error when attempting to generate a genomicRatioSet   Dale Watkins
• [BioC] limma-voom   Gordon K Smyth
  • [BioC] limma-voom   Ming Yi
• [BioC] Best way of presenting a sub-fraction of edgeR RNAseq gene expression results in a publication   Sindre [guest]
• [BioC] Error during installation packages   Elodie Chapeaublanc
  • [BioC] Error during installation packages   James W. MacDonald
• [BioC] RMA normalization in large number of chips   Guilherme Rocha
  • [BioC] RMA normalization in large number of chips   James W. MacDonald
• [BioC] (EdgeR) statistical justification of partitioning dataset for multiple analysis   Adriaan Sticker
  • [BioC] (EdgeR) statistical justification of partitioning dataset for multiple analysis   Ryan
    • [BioC] (EdgeR) statistical justification of partitioning dataset for multiple analysis   Adriaan Sticker
      • [BioC] (EdgeR) statistical justification of partitioning dataset for multiple analysis   Ryan
• [BioC] EdgeR GOF plots   Adriaan Sticker
• [BioC] EdgeR: artifacts on BCV plot   Adriaan Sticker
  • [BioC] EdgeR: artifacts on BCV plot   Ryan
    • [BioC] EdgeR: artifacts on BCV plot   Adriaan Sticker
• [BioC] Using GOstats with ScanArray Express Data   Joseph Shaw [guest]
  • [BioC] Using GOstats with ScanArray Express Data   Steve Lianoglou
• [BioC] EdgeR LogCpm and LogFC values calculation   Koen Van den Berge
  • [BioC] EdgeR LogCpm and LogFC values calculation   P.D. Moerland
    • [BioC] EdgeR LogCpm and LogFC values calculation   Koen Van den Berge
• [BioC] edgeR: fold change reported by exactTest for zero values of rna-seq   Nick N
• [BioC] summarizeOverlaps colData does NOT contain countBam() summary data   Cook, Malcolm
• [BioC] Ontology   Orçun Haçarız [guest]
  • [BioC] Ontology   Steve Lianoglou
    • [BioC] Ontology   Steve Lianoglou
      • [BioC] Ontology   Orcun Hacariz
      • [BioC] Ontology   Steve Lianoglou
      • [BioC] Ontology   Orcun Hacariz
• [BioC] Identifying genes that contribute to limma's roast/romer gene set enrichments   Stephen Hoang
• [BioC] minfi release 1.8   C T

Last message date: Fri Jan 31 22:06:02 CET 2014
Archived on: Sat Feb 1 09:08:15 CET 2014

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