[BioC] unable to install biocLite or BiocInstaller

Naomi Altman naomi at stat.psu.edu
Tue Jan 14 18:18:38 CET 2014


  sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-w64-mingw32/x64 (64-bit)

locale:
[1] LC_COLLATE=English_United States.1252
[2] LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252
[4] LC_NUMERIC=C
[5] LC_TIME=English_United States.1252

attached base packages:
[1] stats graphics grDevices utils datasets methods base
 > source("http://bioconductor.org/biocLite.R")
Installing package into ‘\\smb.pass.psu.edu/nsa1/My 
Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
trying URL 
'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3.0/BiocInstaller_1.10.4.zip'
Content type 'application/zip' length 50486 bytes (49 Kb)
opened URL
downloaded 49 Kb

Warning: cannot remove prior installation of package ‘BiocInstaller’

The downloaded binary packages are in
C:\Users\nsa1\AppData\Local\Temp\RtmpIN7Ew0\downloaded_packages
'biocLite.R' failed to install 'BiocInstaller', use
'install.packages("BiocInstaller",
repos="http://www.bioconductor.org/packages/2.12/bioc")'
 > install.packages("BiocInstaller",
+ repos="http://www.bioconductor.org/packages/2.12/bioc")
Installing package into ‘\\smb.pass.psu.edu/nsa1/My 
Documents/R/win-library/3.0’
(as ‘lib’ is unspecified)
trying URL 
'http://www.bioconductor.org/packages/2.12/bioc/bin/windows/contrib/3.0/BiocInstaller_1.10.4.zip'
Content type 'application/zip' length 50486 bytes (49 Kb)
opened URL
downloaded 49 Kb

Warning: cannot remove prior installation of package ‘BiocInstaller’

The downloaded binary packages are in
C:\Users\nsa1\AppData\Local\Temp\RtmpIN7Ew0\downloaded_packages
 >



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