[BioC] questions on edgeR package

Dario Strbenac dstr7320 at uni.sydney.edu.au
Wed Jan 29 03:00:09 CET 2014


I made the same mistake last week. I got the same common dispersion estimate for my dataset as you did for your dataset.

> allExpectedCounts$common.dispersion
[1] 3.999943

EdgeR is for differential gene expression, not for differential transcript expression.

Dario Strbenac
PhD Student
University of Sydney
Camperdown NSW 2050

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