[BioC] FLowClust/FLowCore

Vijay [guest] guest at bioconductor.org
Tue Jan 21 05:27:32 CET 2014

Hi, I am new to data analysis using R and i tried Flowcore and Flowclust so far and is very pleased with features given. I am using FlowClust to autogate the data. Where i got stuck was that i do not know how to plot log graph i.e 1) drawing a scatter graph where either or both the axis are log converted as my flowframe data is linear and i want to plot log values.

Can anyone guide me in right direction as i tries the transformation as give in How to flowCore pdf but does not help. 
Please guide.

 -- output of sessionInfo(): 

R version 3.0.2 (2013-09-25)
Platform: x86_64-w64-mingw32/x64 (64-bit)

[1] LC_COLLATE=English_United States.1252  LC_CTYPE=English_United States.1252   
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.1252    

attached base packages:
[1] parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] flowClust_3.2.0    clue_0.3-47        corpcor_1.6.6      mnormt_1.4-7      
 [5] flowViz_1.26.01    lattice_0.20-23    ellipse_0.3-8      RBGL_1.38.0       
 [9] graph_1.40.1       Biobase_2.22.0     BiocGenerics_0.8.0 flowCore_1.28.20  

loaded via a namespace (and not attached):
 [1] cluster_1.14.4      coda_0.16-1         feature_1.2.10      grid_3.0.2         
 [5] hexbin_1.26.3       IDPmisc_1.1.17      KernSmooth_2.23-10  ks_1.8.13          
 [9] latticeExtra_0.6-26 MASS_7.3-29         MCMCpack_1.3-3      mvtnorm_0.9-9996   
[13] pcaPP_1.9-49        RColorBrewer_1.0-5  robustbase_0.9-10   rrcov_1.3-4        
[17] stats4_3.0.2        tools_3.0.2        

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