[BioC] miRBase

[Dan Tenenbaum]

Hello Shan,

----- Original Message -----
> From: "Shantanu Karkare [guest]" <guest at bioconductor.org>
> To: bioconductor at r-project.org, "shan karkare" <shan_karkare at yahoo.com>
> Sent: Monday, January 6, 2014 4:56:34 AM
> Subject: [BioC] miRBase
> 
> 
> 
> Hi,
> 
> I have been trying to install miRBase db using the following command
> in R 3.0.2.
> 
> source("http://bioconductor.org/biocLite.R")
> biocLite("mirbase.db")
> 
> But I am receiving the following error:
> 
> Error in file (filename, "r", encoding = encoding):
>    can not open connection
> In addition: Warning message:
> In file (filename, "r", encoding = encoding):
>    can 'bioconductor.org' not dissolve
> > BiocLite ()
> Error: Could function "biocLite" can not find
> 

I am guessing that you were not properly connected to the internet when giving these commands.

Check your internet connection and try again.

You might also try

setInternet2(TRUE)

This may help if you are behind a proxy or firewall.

Dan


> I was wondering if there is problem to install the package.
> 
> Thank you for your help.
> 
> Kind regards,
> Shan
> 
>  -- output of sessionInfo():
> 
> R version 3.0.2 (2013-09-25)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> 
> locale:
> [1] LC_COLLATE=German_Switzerland.1252
>  LC_CTYPE=German_Switzerland.1252
> [3] LC_MONETARY=German_Switzerland.1252 LC_NUMERIC=C
> [5] LC_TIME=German_Switzerland.1252
> 
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
> 
> other attached packages:
> [1] BiocInstaller_1.12.0
> 
> loaded via a namespace (and not attached):
> [1] tools_3.0.2
> 
> 
> --
> Sent via the guest posting facility at bioconductor.org.
> 
> _______________________________________________
> Bioconductor mailing list
> Bioconductor at r-project.org
> https://stat.ethz.ch/mailman/listinfo/bioconductor
> Search the archives:
> http://news.gmane.org/gmane.science.biology.informatics.conductor
>