[BioC] Annotate package not working
Ryan C. Thompson
rct at thompsonclan.org
Thu Jan 9 20:31:28 CET 2014
Hi all,
I'm having some trouble using the "lookUp" function in the "annotate"
package. Every time I try to call it, I get the following error:
Error in as.list.default(envir) :
no method for coercing this S4 class to a vector
I can generate this error with the following short test case:
library(org.Hs.eg.db)
library(annotate)
entrez.ids <- as.character(1:10)
lookUp(entrez.ids,
data="org.Hs.eg",
what="SYMBOL")
Alternatively, simply running the example from the lookUp help page also
produces the error.
Can anyone help me get this working again?
-Ryan Thompson
More information about the Bioconductor
mailing list