[BioC] install qvalue

[Martin Morgan]

On 01/02/2014 06:22 AM, liyue [guest] wrote:
>
> Hi,
>
> I try to install qvalue.
>
>> source("http://bioconductor.org/biocLite.R")
> A new version of Bioconductor is available after installing the most
>    recent version of R; see http://bioconductor.org/install
> Bioconductor version 2.11 (BiocInstaller 1.8.3), ?biocLite for help
>> biocLite("qvalue")
> BioC_mirror: http://bioconductor.org
> Using Bioconductor version 2.11 (BiocInstaller 1.8.3), R version 2.15.
> Installing package(s) 'qvalue'
> 警告信息：
> 1: package ‘qvalue’ is not available (for R version 2.15.1)

As Dan mentions it's probably a good idea to update to the latest R (version 3.0.1)

It would help to understand why you are unable to install qvalue, in particular 
whether the following files are accessible from your location

http://bioconductor.org/packages/2.11/bioc/src/contrib/PACKAGES.gz
http://bioconductor.org/packages/2.11/bioc/src/contrib/qvalue_1.32.0.tar.gz

and whether the problem still occurs, or only occurred transiently?

Martin

> 2: installed directory not writable, cannot update packages 'car', 'chron',
>    'colorspace', 'effects', 'Hmisc', 'lmtest', 'multcomp', 'mvtnorm', 'rgl',
>    'sandwich', 'sm', 'strucchange', 'XML', 'zoo', 'cluster', 'KernSmooth',
>    'lattice', 'Matrix', 'mgcv', 'nnet', 'rpart', 'survival'
>
> Thank you in advance for great help!
>
> Best,
>
> liyue
>
>   -- output of sessionInfo():
>
>> sessionInfo()
> R version 2.15.1 (2012-06-22)
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> locale:
>   [1] LC_CTYPE=zh_CN.UTF-8       LC_NUMERIC=C
>   [3] LC_TIME=zh_CN.UTF-8        LC_COLLATE=zh_CN.UTF-8
>   [5] LC_MONETARY=zh_CN.UTF-8    LC_MESSAGES=zh_CN.UTF-8
>   [7] LC_PAPER=C                 LC_NAME=C
>   [9] LC_ADDRESS=C               LC_TELEPHONE=C
> [11] LC_MEASUREMENT=zh_CN.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] BiocInstaller_1.8.3
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.1
>
>
> --
> Sent via the guest posting facility at bioconductor.org.
>
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