March 2009 Archives by date
Starting: Sun Mar 1 11:14:50 CET 2009
Ending: Tue Mar 31 23:13:23 CEST 2009
Messages: 418
- [BioC] Cannot find MoGene-1.0
Peter Robinson
- [BioC] Cannot find MoGene-1.0
Sean Davis
- [BioC] justGCRMA problem :(
Jacek Nowak
- [BioC] justGCRMA problem :(
Martin Morgan
- [BioC] Cannot find MoGene-1.0
Manhong Dai
- [BioC] Heatmap hints and identifying differentially expressed genes
Amy Johnson
- [BioC] Heatmap hints and identifying differentially expressed genes
Marietta Herrmann
- [BioC] Heatmap hints and identifying differentially expressed genes
Amy Johnson
- [BioC] Heatmap hints and identifying differentially expressed genes
Steve Lianoglou
- [BioC] Graphviz in Vista64
Sim, Fraser
- [BioC] limma printer layout
Jose Coria
- [BioC] Help on: Resizing the plot of a dendrogram when plotting clusters
maon yskmohc
- [BioC] Help on: Resizing the plot of a dendrogram when plotting clusters
maon yskmohc
- [BioC] Heatmap hints and identifying differentially expressed genes
Sean Davis
- [BioC] Graphviz in Vista64
Kasper Daniel Hansen
- [BioC] help limma printer layout
Jose Coria
- [BioC] FW: Graphviz in Vista64
Sim, Fraser
- [BioC] FW: Graphviz in Vista64
Kasper Daniel Hansen
- [BioC] FW: Graphviz in Vista64
Sim, Fraser
- [BioC] FW: Graphviz in Vista64
Martin Morgan
- [BioC] FW: Graphviz in Vista64
Kasper Daniel Hansen
- [BioC] (CRLMM) an issue needs to be clarified
Ping-Hsun Hsieh
- [BioC] FW: Graphviz in Vista64
Sim, Fraser
- [BioC] FW: Graphviz in Vista64
Kasper Daniel Hansen
- [BioC] FW: Graphviz in Vista64
Sim, Fraser
- [BioC] Missing code in Lumi package Vignette
Pan Du
- [BioC] matchPdict error
Hervé Pagès
- [BioC] Three questions about processing Agilent Arrays
David Garfield
- [BioC] FW: Graphviz in Vista64
Kasper Daniel Hansen
- [BioC] Convert KEGGpathway to nuID in lumi
ss
- [BioC] From eSet to AffyBatch Object
Boris Umylny
- [BioC] ragene10st
Sebastien Gerega
- [BioC] Convert KEGGpathway to nuID in lumi
Martin Morgan
- [BioC] From eSet to AffyBatch Object
Martin Morgan
- [BioC] ragene10st
Manhong Dai
- [BioC] From eSet to AffyBatch Object
Jenny Drnevich
- [BioC] affyPLM QC vignette is missing...
Jenny Drnevich
- [BioC] ragene10st
Hooiveld, Guido
- [BioC] KEGGgraph question
Sim, Fraser
- [BioC] Gostats and custom list
Iain Wallace
- [BioC] limma printer layout
Gordon K Smyth
- [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays
zhen tao
- [BioC] annotating genes using KEGG
dhaarini s
- [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays
Naira Naouar
- [BioC] LIMMA, behaviour of 'lmFit': warnings
J.delasHeras at ed.ac.uk
- [BioC] other human genomes, other SNP sets?
Paul Shannon
- [BioC] annotating genes using KEGG
James W. MacDonald
- [BioC] annotating genes using KEGG
Saroj K Mohapatra
- [BioC] Error in as.vector(x, mode)
Ayyarappan Bharathi
- [BioC] Error in as.vector(x, mode)
James W. MacDonald
- [BioC] Choosing the transcripts for dataanalysis from GeneChip
John Antonydas Gaspar
- [BioC] question about QCReport
Yan Zhang
- [BioC] using GOSim with yeast genes
prsmra01 at uniroma2.it
- [BioC] Choosing the transcripts for dataanalysis from GeneChip
James W. MacDonald
- [BioC] Choosing the transcripts for dataanalysis from GeneChip
Bjoern Usadel
- [BioC] question about QCReport
Saroj Mohapatra
- [BioC] Advanced Course in Analysis of Short Read Sequencing Data
Wolfgang Huber
- [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays
Wolfgang Huber
- [BioC] (CRLMM) an issue needs to be clarified
Ping-Hsun Hsieh
- [BioC] error message from bioMart
Di Wu
- [BioC] discrepancy between BeadStudio images and beadarray imageplot
Luis Fernando Menezes
- [BioC] (no subject)
Jack Schultz
- [BioC] annotating genes using KEGG
dhaarini s
- [BioC] RmiR, request for new package
ngopalak at fhcrc.org
- [BioC] error message from bioMart
steffen at stat.Berkeley.EDU
- [BioC] Three questions about processing Agilent Arrays
Gordon K Smyth
- [BioC] limma and 3 group design
Daren Tan
- [BioC] From eSet to AffyBatch Object
Boris Umylny
- [BioC] discrepancy between BeadStudio images and beadarray imageplot
Cei Abreu-Goodger
- [BioC] discrepancy between BeadStudio images and beadarray imageplot
Mark Dunning
- [BioC] Agi4x44PreProcess for miRNA data
Marten Jäger
- [BioC] Agi4x44PreProcess for miRNA data
Yong Li
- [BioC] building a SNPlocs data package [was: other human genomes, other SNP sets?]
Paul Shannon
- [BioC] Assistant/Associate Professor Department of Biostatistics
Kellie J Archer/FS/VCU
- [BioC] problem with createBeadSummaryData
Groot, Philip de
- [BioC] ragene10st
Manhong Dai
- [BioC] building a SNPlocs data package [was: other human genomes, other SNP sets?]
Vincent Carey
- [BioC] problem with createBeadSummaryData
Mark Dunning
- [BioC] Creating annotation packages
Gábor Csárdi
- [BioC] protein function prediction for transcript isoforms
shirley zhang
- [BioC] discrepancy between BeadStudio images and beadarray imageplot
Luis Fernando Menezes
- [BioC] LIMMA, behaviour of 'lmFit': warnings
Gordon K Smyth
- [BioC] ragene10st
Sebastien Gerega
- [BioC] LIMMA, behaviour of 'lmFit': warnings
J.delasHeras at ed.ac.uk
- [BioC] building a SNPlocs data package [was: other human genomes, other SNP sets?]
Paul Shannon
- [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays
Wolfgang Huber
- [BioC] From eSet to AffyBatch Object
Martin Morgan
- [BioC] CMA package: variable selection with limma
Renaud Gaujoux
- [BioC] biomaRt error
Lakshmanan Iyer
- [BioC] heatmap_2: How to change the legend on the color key?
Yen Ngo
- [BioC] heatmap_2: How to change the legend on the color key?
Saroj Mohapatra
- [BioC] Possible to set alternative colnames on read.flowSet (flowCore)
Aric Gregson
- [BioC] Cloud Plotting? flowViz/Core
Aric Gregson
- [BioC] Possible to set alternative colnames on read.flowSet (flowCore)
Florian Hahne
- [BioC] Cloud Plotting? flowViz/Core
Florian Hahne
- [BioC] Possible to set alternative colnames on read.flowSet (flowCore)
Aric Gregson
- [BioC] Error in HyperGTest with GOHyperGParams class
Mayte Suarez-Farinas
- [BioC] Possible to set alternative colnames on read.flowSet (flowCore)
Florian Hahne
- [BioC] Possible to set alternative colnames on read.flowSet (flowCore)
Aric Gregson
- [BioC] Research positions available in neuroproteomics
Abhilash Venu
- [BioC] Un site internet pour votre bien immobilier pour bioconductor de stat.math.ethz.ch
ymmoo.info
- [BioC] Error in HyperGTest with GOHyperGParams class
Pankaj Chopra
- [BioC] running exonmap package and chimp arrays
Pete Shepard
- [BioC] reading probe ID file
kuntal worah
- [BioC] biomaRt error
Wolfgang Huber
- [BioC] Cloud Plotting? flowViz/Core
Aric Gregson
- [BioC] Bioconductor Digest, Vol 73, Issue 8
ramesh aathe
- [BioC] RG.MA in limma
Wang, Jixin
- [BioC] heatmap_2: How to change the legend on the color key?
Yen Ngo
- [BioC] RG.MA in limma
Peder Worning
- [BioC] running exonmap package and chimp arrays
Michal Okoniewski
- [BioC] How to generate the CDF files for Arabidopsis TilingArrays
Al Ivens
- [BioC] ragene10st
Groot, Philip de
- [BioC] Problem memory exonmap
Guido Leoni
- [BioC] duplicate entries in org.Hs.egCHRLOC?
Paul Shannon
- [BioC] duplicate entries in org.Hs.egCHRLOC?
Sean Davis
- [BioC] heatmap_2: How to change the legend on the color key?
Saroj Mohapatra
- [BioC] ragene10st
Marc Carlson
- [BioC] generate heat map from expression ratio using preprocessed data
Pete Shepard
- [BioC] generate heat map from expression ratio using preprocessed data
Sean Davis
- [BioC] ragene10st
Groot, Philip de
- [BioC] Package "xps" import.data error
Wang, Yonghong (NIH/NCI) [C]
- [BioC] RG.MA in limma
Wang, Jixin
- [BioC] Package "xps" import.data error
cstrato
- [BioC] RG.MA in limma
Naomi Altman
- [BioC] Package "xps" import.data error
cstrato
- [BioC] Package "xps" import.data error
cstrato
- [BioC] Help
fei tian
- [BioC] From eSet to AffyBatch Object
Boris Umylny
- [BioC] RG.MA in limma
Peder Worning
- [BioC] cdf and probe for HT HG-U133+ PM Array Plate
De Bondt, An-7114 [PRDBE]
- [BioC] Analysing Illumina v2 and v3 platforms
Emanuele Marchi
- [BioC] Course - March/April ** R / Splus ** course in New York City and San Francisco*** by XLSolutions Corp
sue at xlsolutions-corp.com
- [BioC] Biomart Error
Becky Saunders
- [BioC] Announcement: Deadline for new package submission
Nishant Gopalakrishnan
- [BioC] Agi4x44PreProcess for miRNA data
Pedro Lopez-Romero
- [BioC] 2 sample t test using xps package
Wang, Yonghong (NIH/NCI) [C]
- [BioC] Limma duplicateCorrelation question: how to handle both on-chip and between chip technical replicates?
Joseph Fass
- [BioC] 2 sample t test using xps package
cstrato
- [BioC] Introductory BioC Course 27-29 April 09: Analyzing Microarray Experiments
Patrick Aboyoun
- [BioC] Agi4x44PreProcess for miRNA data
Marten Jäger
- [BioC] Biomart Error
Rhoda Kinsella
- [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
Nenad Bartonicek
- [BioC] error with pileup function in ShortRead
Davide Cittaro
- [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
James W. MacDonald
- [BioC] Analysing Illumina v2 and v3 platforms
Pan Du
- [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
James MacDonald
- [BioC] ANOVA p value calculation
Antony
- [BioC] ANOVA p value calculation
Sean Davis
- [BioC] Agi4x44PreProcess for miRNA data
Pedro Lopez-Romero
- [BioC] Axis Scales & Components After Logicle Transformation (flowViz)
Aric Gregson
- [BioC] heatmap output problems in pdf
Pete Shepard
- [BioC] txt fille
Joanna Zyprych
- [BioC] txt fille
Steve Lianoglou
- [BioC] heatmap output problems in pdf
Saroj K Mohapatra
- [BioC] matchPdict error
Hervé Pagès
- [BioC] ANOVA p value calculation
Adaikalavan Ramasamy
- [BioC] hypergeometric test in GOstats
Sebastien Gerega
- [BioC] hypergeometric test in GOstats
Robert Gentleman
- [BioC] Curious file size issues
Daniel Brewer
- [BioC] lokalisten: dein registrierungs-code
register at lokalisten.de
- [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"
Nenad Bartonicek
- [BioC] Curious file size issues
Adaikalavan Ramasamy
- [BioC] Nomalization using spike-in controls in single channel arrays using limma
David
- [BioC] Curious file size issues
Vincent Carey
- [BioC] txt fille
Steve Lianoglou
- [BioC] Curious file size issues
Daniel Brewer
- [BioC] building a new annotation
Chirag Patel
- [BioC] building a new annotation
Marc Carlson
- [BioC] Axis Scales & Components After Logicle Transformation (flowViz)
Florian Hahne
- [BioC] Axis Scales & Components After Logicle Transformation (flowViz)
Aric Gregson
- [BioC] building a new annotation
Marc Carlson
- [BioC] Biomart Error
steffen at stat.Berkeley.EDU
- [BioC] How to cope with arrays hybridized at significantly different time.
Triantafillos Paparountas
- [BioC] hypergeometric test in GOstats
Sebastien Gerega
- [BioC] Please add hugene10stv1.cdf
Gormley, Matthew
- [BioC] RG.MA in limma
Wang, Jixin
- [BioC] RG.MA in limma
Wang, Jixin
- [BioC] RG.MA in limma
Wang, Jixin
- [BioC] building a new annotation
Hervé Pagès
- [BioC] How to cope with arrays hybridized at significantly different time.
Michal Okoniewski
- [BioC] Biomart Error
Rhoda Kinsella
- [BioC] Single channel spike in controls with custom microRNA slides - Normalization help needed
david vilanova
- [BioC] Single channel spike in controls with custom microRNA slides - Normalization help needed
david vilanova
- [BioC] Ensembl mart release 53: Useful information for BiomaRt users
Rhoda Kinsella
- [BioC] GOstats Annotation Package
"Jörg Linde"
- [BioC] Please add hugene10stv1.cdf
James W. MacDonald
- [BioC] building a new annotation
Gábor Csárdi
- [BioC] No degree of freedom in maanova
Marcelo Laia
- [BioC] How to cope with arrays hybridized at significantly different time.
Steve Lianoglou
- [BioC] GEO metadata
Jack Zhu
- [BioC] Need help with MLearn in MLInterfaces package
Tul Gan
- [BioC] Need help with MLearn in MLInterfaces package
Vincent Carey
- [BioC] How to cope with arrays hybridized at significantly different time.
Juan Pedro Steibel
- [BioC] How to cope with arrays hybridized at significantly different time.
Christos Hatzis
- [BioC] building a new annotation
Hervé Pagès
- [BioC] cdf and probe for HT HG-U133+ PM Array Plate
cstrato
- [BioC] error with pileup function in ShortRead
Hervé Pagès
- [BioC] error with pileup function in ShortRead
Simon Anders
- [BioC] error with pileup function in ShortRead
Martin Morgan
- [BioC] Consulting project
Boris Umylny
- [BioC] GOLOCUSID
John Lande
- [BioC] GOLOCUSID
Saroj K Mohapatra
- [BioC] self-self hybridisations to estimate dye-bias
Nathan S. Watson-Haigh
- [BioC] Illumina: how to deal with locs, idat and tif files
Jean-Baptiste Poullet
- [BioC] No degree of freedom in maanova
Marcelo Laia
- [BioC] How to cope with arrays hybridized at significantly different time.
Paparountas Triantafyllos
- [BioC] dye swap control: discrepancy of correlation between R vs R and M vs M
Christine Voellenkle
- [BioC] dye swap control: discrepancy of correlation between R vs Rand M vs M
Peder Worning
- [BioC] KEGGgraph question
Sim, Fraser
- [BioC] Is it normal that normalize.loess does not tolerate a single NA value?
Emmanuel Levy
- [BioC] Dye effect problem with Limma package
Jean-Laurent Ichanté
- [BioC] GOLOCUSID
Marc Carlson
- [BioC] question about heatmap.2
Wei Xu
- [BioC] network analyses on genes or probesets
Markus Schmidberger
- [BioC] question about heatmap.2
James W. MacDonald
- [BioC] question about heatmap.2
Christof Winter
- [BioC] question about heatmap.2
Saroj K Mohapatra
- [BioC] network analyses on genes or probesets
Marc Carlson
- [BioC] question about heatmap.2
Wei Xu
- [BioC] script line to multiply a vector by another vector or matrix
Hervé Pagès
- [BioC] How to get NCBI's gene annotation?
Wei Shi
- [BioC] How to get NCBI's gene annotation?
Hotz, Hans-Rudolf
- [BioC] How to get NCBI's gene annotation?
Sean Davis
- [BioC] How to get NCBI's gene annotation?
James F. Reid
- [BioC] The Web is 20 years old and its impact on journal reference management
Anderson Brown
- [BioC] How to get NCBI's gene annotation?
Marc Carlson
- [BioC] [R] Need to build package for Affy HT HG-U133+ PM arrays
James W. MacDonald
- [BioC] flowCore: logicle transformation of flow cytometry data
Saumyadipta Pyne
- [BioC] flowCore: logicle transformation of flow cytometry data
Nishant Gopalakrishnan
- [BioC] Dye effect problem with Limma package
Gordon K Smyth
- [BioC] hypergeometric test in GOstats
Marc Carlson
- [BioC] hypergeometric test in GOstats
Sebastien Gerega
- [BioC] flowCore: logicle transformation of flow cytometry data
fhahne at fhcrc.org
- [BioC] How to get NCBI's gene annotation?
Wei Shi
- [BioC] Methyl-Chip - Affymetrix promoter array
Adrian Johnson
- [BioC] How to get NCBI's gene annotation?
Wei Shi
- [BioC] CISP’09-BMEI’09: Submission Deadline 20 April
CISP’09-BMEI’09
- [BioC] handling multiple gal files in limma
mark alston (IFR)
- [BioC] Getting additional columns from Imagene files with read.maimages from limma
Peder Worning
- [BioC] Problems with clValid: "fanny unable to find clusters"
"Jörg Linde"
- [BioC] FW: Graphviz in Vista64
Paweł Matykiewicz
- [BioC] Warning in mergeLevels
Oscar Rueda
- [BioC] How to get NCBI's gene annotation?
Marc Carlson
- [BioC] genefilter problem
Wayne Xu
- [BioC] Exonmap and Limma
Mathieu Parent
- [BioC] genefilter problem
Martin Morgan
- [BioC] genefilter problem
Wayne Xu
- [BioC] org.Hs.eg question
Sim, Fraser
- [BioC] handling multiple gal files in limma
Gordon K Smyth
- [BioC] How to get NCBI's gene annotation?
Wei Shi
- [BioC] FW: Graphviz in Vista64
Kasper Daniel Hansen
- [BioC] Place summary stats in names in flowViz xyplot
Aric Gregson
- [BioC] Halifax Bank Secure Message
Halifax Bank Secure Team
- [BioC] vsn add-on normalization
Markus Schmidberger
- [BioC] How to display chromosome rapresentation ?
Giulio Di Giovanni
- [BioC] How to display chromosome rapresentation ?
J.Oosting at lumc.nl
- [BioC] How to display chromosome rapresentation ?
Sean Davis
- [BioC] Using as.geneSet in GeneticsBase - problems with gene.columns
Johannes Gulmann Madsen
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] GEOmetadb and gse organism type
Sean Davis
- [BioC] Online Access Suspended 'Get Safe Online'
Abbey National
- [BioC] org.Hs.eg question
Marc Carlson
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] GEOmetadb and gse organism type
Sean Davis
- [BioC] Getting additional columns from Imagene files with read.maimages from limma
Gordon K Smyth
- [BioC] Important: Security Information Notice.
Cahoot Bank
- [BioC] Limma: 2 venn diagrams on single page
Daren Tan
- [BioC] Place summary stats in names in flowViz xyplot
Florian Hahne
- [BioC] Problems reading multiple MAQ map files with ShortRead ReadAligned
David Rossell
- [BioC] org.Hs.eg question
Rhoda Kinsella
- [BioC] Possible bug in ShortRead pileup function
David Rossell
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] GEOmetadb and gse organism type
Laurent Gautier
- [BioC] Problems reading multiple MAQ map files with ShortRead ReadAligned
Martin Morgan
- [BioC] Problems reading multiple MAQ map files with ShortRead ReadAligned
Martin Morgan
- [BioC] Possible bug in ShortRead pileup function
David Rossell
- [BioC] Possible bug in ShortRead pileup function
Martin Morgan
- [BioC] Error when loading xps
Michael Walter
- [BioC] Possible bug in ShortRead pileup function
Martin Morgan
- [BioC] GEOmetadb and gse organism type
Sean Davis
- [BioC] Error when loading xps
cstrato
- [BioC] GEOmetadb and gse organism type
Jack Zhu
- [BioC] Error when loading xps
Michael Walter
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] org.Hs.eg question
Sim, Fraser
- [BioC] Analyzing MeDIP-Chip data - using Affymetrix promoter array
Adrian Johnson
- [BioC] org.Hs.eg question
Sim, Fraser
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] GEOmetadb and gse organism type
Laurent Gautier
- [BioC] Using as.geneSet in GeneticsBase - problems with gene.columns
weiliang Qiu
- [BioC] Package celeganscdf_1.4.3.tar.gz has been checked and built
Uwe.Ligges at r-project.org
- [BioC] How to do RMA normalize.
kenzy ken
- [BioC] How to do RMA normalize.
cstrato
- [BioC] Agilent miRNA
Paulo Nuin
- [BioC] Analyzing MeDIP-Chip data - using Affymetrix promoter array
Michael Lawrence
- [BioC] exonmap and splicing index
Mathieu Parent
- [BioC] IRange, license and warnings
Pierre-Yves
- [BioC] IRange, license and warnings
Michael Lawrence
- [BioC] limma design: paired samples, two groups
Jussi Paananen
- [BioC] XPS vs APT
Daren Tan
- [BioC] Agilent miRNA
Marten Jäger
- [BioC] Making table with SNP-ID, allele combination and genotype to verify correctness.
Johannes Gulmann Madsen
- [BioC] GEOmetadb and gse organism type
Jack Zhu
- [BioC] Using Affymetrix PM chips with Bioconductor
James Mcininch
- [BioC] GEOmetadb and gse organism type
Wacek Kusnierczyk
- [BioC] Using Affymetrix PM chips with Bioconductor
Ben Bolstad
- [BioC] Mailing List of infectious disease specialists, neurological surgeons, otolaryngologists and dozens more specialties
Luis O Roy
- [BioC] program suggestion - weighted averaging of multiple probes
alison.waller at utoronto.ca
- [BioC] Limma: 2 venn diagrams on single page
James W. MacDonald
- [BioC] Using Affymetrix PM chips with Bioconductor
James Mcininch
- [BioC] XPS vs APT
cstrato
- [BioC] color venn diagrams
Yannick Wurm
- [BioC] color venn diagrams
Francois Pepin
- [BioC] color venn diagrams
Francois Pepin
- [BioC] Problems reading single channel GenePix data with read.maimages.
Paul Geeleher
- [BioC] color venn diagrams
oliveros at cnb.csic.es
- [BioC] assemble DNAString complete coding sequence from exons?
Paul Shannon
- [BioC] RMA median polish to a matrix
Georgia Corner
- [BioC] visualization and alignment of affymetirx probe sequence to transcripts
shirley zhang
- [BioC] tilingArray: error message
Hui Tang
- [BioC] Problems reading single channel GenePix data with read.maimages.
Martin Morgan
- [BioC] visualization and alignment of affymetirx probe sequence to transcripts
shirley zhang
- [BioC] GOLOCUSID
John Lande
- [BioC] GOLOCUSID
Marc Carlson
- [BioC] tilingArray: error message in function segment()
Hui Tang
- [BioC] assemble DNAString complete coding sequence from exons?
Hervé Pagès
- [BioC] differential expression methods
Mohamed lajnef
- [BioC] differential expression methods
Sean Davis
- [BioC] differential expression methods
Wei Shi
- [BioC] differential expression methods
Sean Davis
- [BioC] Filtering SAM results
Assa Yeroslaviz
- [BioC] Filtering SAM results
Holger Schwender
- [BioC] Possible bug in ShortRead pileup function
Martin Morgan
- [BioC] Bioconductor Digest, Vol 73, Issue 25
Bogdan Tanasa
- [BioC] Bioconductor Digest, Vol 73, Issue 25
Patrick Aboyoun
- [BioC] Sheep samples measured with a Affymetrix bovine array
Mattias Bair
- [BioC] Sheep samples measured with a Affymetrix bovine array
Balasubramanian Ganesan
- [BioC] assemble DNAString complete coding sequence from exons?
Hervé Pagès
- [BioC] Methyl-Chip - Affymetrix promoter array
Hervé Pagès
- [BioC] Problems with clValid: "fanny unable to find clusters"
Hervé Pagès
- [BioC] Error in PLW package plw()
davidl at unr.nevada.edu
- [BioC] Error in PLW package plw()
Martin Morgan
- [BioC] Sheep samples measured with a Affymetrix bovine array
Mattias Bair
- [BioC] Prix incroyables en vente privee chez Dessous Cheri
Ludovic Rouillon IA79
- [BioC] Error message when working with sam
Assa Yeroslaviz
- [BioC] Sheep samples measured with a Affymetrix bovine array
Sean Davis
- [BioC] Bioinformatics postdoc in Brussels
Vincent Detours
- [BioC] Error message when working with sam
James W. MacDonald
- [BioC] Error message when working with sam
Holger Schwender
- [BioC] Rma method for library xps
carissimo at tigem.it
- [BioC] Error in PLW package plw()
davidl at unr.nevada.edu
- [BioC] Xps package : errors and RMA difference with Partek GS
arnaud Le Cavorzin
- [BioC] CDFs for the HT Rat 230 PM Array
Raghavan, Nandini [PRDUS]
- [BioC] Rma method for library xps
cstrato
- [BioC] arrayQualityMetrics -weighted bad spots Imagene files
Louise Donnison
- [BioC] CDFs for the HT Rat 230 PM Array
Mark Robinson
- [BioC] difficulty of using getSYMBOL with lumi nuID
Zhang,Jiexin
- [BioC] difficulty of using getSYMBOL with lumi nuID
Sean Davis
- [BioC] difficulty of using getSYMBOL with lumi nuID
Zhang,Jiexin
- [BioC] Xps package : errors and RMA difference with Partek GS
cstrato
- [BioC] CDFs for the HT Rat 230 PM Array
Marc Carlson
- [BioC] President Ellen Johnson Sirleaf, Project Runway's Korto Momolu & Activist Kimmie Weeks
THEORACLEGROUP.NET
- [BioC] helps about exporting with limma
bo li
- [BioC] arrayQualityMetrics -weighted bad spots Imagene files
audrey at ebi.ac.uk
- [BioC] Biological duplicates
ab19 at sanger.ac.uk
- [BioC] Biological duplicates
Sean Davis
- [BioC] helps about exporting with limma
Sean Davis
- [BioC] Biological duplicates
Sean Davis
- [BioC] LIMMA MZ Twin design
Mario Falchi
- [BioC] New to microarray analysis
Philip Twumasi-Ankrah
- [BioC] packages for hugene10st
Mayte Suarez-Farinas
- [BioC] New to microarray analysis
Sean Davis
- [BioC] packages for hugene10st
James W. MacDonald
- [BioC] New to microarray analysis
Narendra Kaushik
- [BioC] justGCRMA problem :(
Jacek Nowak
- [BioC] packages for hugene10st
Tobias Straub
- [BioC] arrayQualityMetrics -weighted bad spots Imagene files
audrey at ebi.ac.uk
- [BioC] Differential anlaysis (limma)
Mohamed lajnef
- [BioC] Concordance correlation coefficient and data manipulation
John Herbert
- [BioC] Differential anlaysis (limma)
Sean Davis
- [BioC] Xps package : errors and RMA difference with Partek GS
cstrato
- [BioC] Differential anlaysis (limma)
Wei Shi
- [BioC] Biological duplicates
Wei Shi
- [BioC] Xps package : errors and RMA difference with Partek GS
arnaud Le Cavorzin
- [BioC] feature selection according to sequence information
qinghua xu
- [BioC] Custom Web Design (with CMS)
David Mathew
- [BioC] New microRNA & qPCR workshop in April 2009
New microRNA & qPCR workshop in April 2009
- [BioC] Concordance correlation coefficient and data manipulation
James W. MacDonald
- [BioC] probe ID for affymetrix data
Xingmei Wang
- [BioC] Xps package : errors and RMA difference with Partek GS
arnaud Le Cavorzin
- [BioC] probe ID for affymetrix data
James W. MacDonald
- [BioC] probe ID for affymetrix data
Xingmei Wang
- [BioC] Problems with combineNodes in graph
Michael Hahsler
- [BioC] Xps package : errors and RMA difference with Partek GS
cstrato
- [BioC] Problems with combineNodes in graph
Florian Hahne
- [BioC] biomaRt proxy issues
Steve Pederson
- [BioC] Differential anlaysis (limma)
Wei Shi
- [BioC] Compilation or syntax error in IRanges sort_util.c package
Michael Dondrup
- [BioC] Xps package : errors and RMA difference with Partek GS
arnaud Le Cavorzin
- [BioC] time series analysis in samr
Assa Yeroslaviz
- [BioC] Normalize data across platforms
Steve Taylor
- [BioC] Normalize data across platforms
michael watson (IAH-C)
- [BioC] feature selection according to sequence information
Christof Winter
- [BioC] Compilation or syntax error in IRanges sort_util.c package
Michael Lawrence
- [BioC] Normalize data across platforms
Steve Taylor
- [BioC] Basic question reading special chars using read.table
David martin
- [BioC] Basic question reading special chars using read.table
Sean Davis
- [BioC] Basic question reading special chars using read.table
Vincent Carey
- [BioC] Basic question reading special chars using read.table
Yannick Wurm
- [BioC] Limma: NA handling in contrasts.fit
Simon Anders
- [BioC] Beadarray error: comparison of types not implemented
Anne-Kristin Stavrum
- [BioC] Normalize data across platforms
Priscila Darakjian
- [BioC] Basic question reading special chars using read.table
David martin
- [BioC] Basic question reading special chars using read.table
David martin
- [BioC] Xps package : errors and RMA difference with Partek GS
cstrato
- [BioC] limma Time Course Experiments question
Marcelo Laia
Last message date:
Tue Mar 31 23:13:23 CEST 2009
Archived on: Tue Mar 31 23:14:42 CEST 2009
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