March 2009 Archives by author

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Starting: Sun Mar 1 11:14:50 CET 2009
Ending: Tue Mar 31 23:13:23 CEST 2009
Messages: 418

• [BioC] Normalize data across platforms   michael watson (IAH-C)
• [BioC] handling multiple gal files in limma   mark alston (IFR)
• [BioC] New microRNA & qPCR workshop in April 2009   New microRNA & qPCR workshop in April 2009
• [BioC] Introductory BioC Course 27-29 April 09: Analyzing Microarray Experiments   Patrick Aboyoun
• [BioC] Bioconductor Digest, Vol 73, Issue 25   Patrick Aboyoun
• [BioC] discrepancy between BeadStudio images and beadarray imageplot   Cei Abreu-Goodger
• [BioC] RG.MA in limma   Naomi Altman
• [BioC] error with pileup function in ShortRead   Simon Anders
• [BioC] Limma: NA handling in contrasts.fit   Simon Anders
• [BioC] ANOVA p value calculation   Antony
• [BioC] Assistant/Associate Professor Department of Biostatistics   Kellie J Archer/FS/VCU
• [BioC] Sheep samples measured with a Affymetrix bovine array   Mattias Bair
• [BioC] Sheep samples measured with a Affymetrix bovine array   Mattias Bair
• [BioC] Important: Security Information Notice.   Cahoot Bank
• [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"   Nenad Bartonicek
• [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"   Nenad Bartonicek
• [BioC] Error in as.vector(x, mode)   Ayyarappan Bharathi
• [BioC] Using Affymetrix PM chips with Bioconductor   Ben Bolstad
• [BioC] Curious file size issues   Daniel Brewer
• [BioC] Curious file size issues   Daniel Brewer
• [BioC] The Web is 20 years old and its impact on journal reference management   Anderson Brown
• [BioC] CISP’09-BMEI’09: Submission Deadline 20 April   CISP’09-BMEI’09
• [BioC] building a SNPlocs data package [was: other human genomes, other SNP sets?]   Vincent Carey
• [BioC] Curious file size issues   Vincent Carey
• [BioC] Need help with MLearn in MLInterfaces package   Vincent Carey
• [BioC] Basic question reading special chars using read.table   Vincent Carey
• [BioC] ragene10st   Marc Carlson
• [BioC] building a new annotation   Marc Carlson
• [BioC] building a new annotation   Marc Carlson
• [BioC] GOLOCUSID   Marc Carlson
• [BioC] network analyses on genes or probesets   Marc Carlson
• [BioC] How to get NCBI's gene annotation?   Marc Carlson
• [BioC] hypergeometric test in GOstats   Marc Carlson
• [BioC] How to get NCBI's gene annotation?   Marc Carlson
• [BioC] org.Hs.eg question   Marc Carlson
• [BioC] GOLOCUSID   Marc Carlson
• [BioC] CDFs for the HT Rat 230 PM Array   Marc Carlson
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Xps package : errors and RMA difference with Partek GS   arnaud Le Cavorzin
• [BioC] Error in HyperGTest with GOHyperGParams class   Pankaj Chopra
• [BioC] error with pileup function in ShortRead   Davide Cittaro
• [BioC] limma printer layout   Jose Coria
• [BioC] help limma printer layout   Jose Coria
• [BioC] RMA median polish to a matrix   Georgia Corner
• [BioC] Creating annotation packages   Gábor Csárdi
• [BioC] building a new annotation   Gábor Csárdi
• [BioC] Cannot find MoGene-1.0   Manhong Dai
• [BioC] ragene10st   Manhong Dai
• [BioC] ragene10st   Manhong Dai
• [BioC] Normalize data across platforms   Priscila Darakjian
• [BioC] Nomalization using spike-in controls in single channel arrays using limma   David
• [BioC] Cannot find MoGene-1.0   Sean Davis
• [BioC] Heatmap hints and identifying differentially expressed genes   Sean Davis
• [BioC] duplicate entries in org.Hs.egCHRLOC?   Sean Davis
• [BioC] generate heat map from expression ratio using preprocessed data   Sean Davis
• [BioC] ANOVA p value calculation   Sean Davis
• [BioC] How to get NCBI's gene annotation?   Sean Davis
• [BioC] How to display chromosome rapresentation ?   Sean Davis
• [BioC] GEOmetadb and gse organism type   Sean Davis
• [BioC] GEOmetadb and gse organism type   Sean Davis
• [BioC] GEOmetadb and gse organism type   Sean Davis
• [BioC] differential expression methods   Sean Davis
• [BioC] differential expression methods   Sean Davis
• [BioC] Sheep samples measured with a Affymetrix bovine array   Sean Davis
• [BioC] difficulty of using getSYMBOL with lumi nuID   Sean Davis
• [BioC] Biological duplicates   Sean Davis
• [BioC] helps about exporting with limma   Sean Davis
• [BioC] Biological duplicates   Sean Davis
• [BioC] New to microarray analysis   Sean Davis
• [BioC] Differential anlaysis (limma)   Sean Davis
• [BioC] Basic question reading special chars using read.table   Sean Davis
• [BioC] cdf and probe for HT HG-U133+ PM Array Plate   De Bondt, An-7114 [PRDBE]
• [BioC] Bioinformatics postdoc in Brussels   Vincent Detours
• [BioC] Compilation or syntax error in IRanges sort_util.c package   Michael Dondrup
• [BioC] arrayQualityMetrics -weighted bad spots Imagene files   Louise Donnison
• [BioC] From eSet to AffyBatch Object   Jenny Drnevich
• [BioC] affyPLM QC vignette is missing...   Jenny Drnevich
• [BioC] Missing code in Lumi package Vignette   Pan Du
• [BioC] Analysing Illumina v2 and v3 platforms   Pan Du
• [BioC] discrepancy between BeadStudio images and beadarray imageplot   Mark Dunning
• [BioC] problem with createBeadSummaryData   Mark Dunning
• [BioC] LIMMA MZ Twin design   Mario Falchi
• [BioC] Limma duplicateCorrelation question: how to handle both on-chip and between chip technical replicates?   Joseph Fass
• [BioC] Need help with MLearn in MLInterfaces package   Tul Gan
• [BioC] Sheep samples measured with a Affymetrix bovine array   Balasubramanian Ganesan
• [BioC] Three questions about processing Agilent Arrays   David Garfield
• [BioC] Choosing the transcripts for dataanalysis from GeneChip   John Antonydas Gaspar
• [BioC] CMA package: variable selection with limma   Renaud Gaujoux
• [BioC] GEOmetadb and gse organism type   Laurent Gautier
• [BioC] GEOmetadb and gse organism type   Laurent Gautier
• [BioC] Problems reading single channel GenePix data with read.maimages.   Paul Geeleher
• [BioC] hypergeometric test in GOstats   Robert Gentleman
• [BioC] ragene10st   Sebastien Gerega
• [BioC] ragene10st   Sebastien Gerega
• [BioC] hypergeometric test in GOstats   Sebastien Gerega
• [BioC] hypergeometric test in GOstats   Sebastien Gerega
• [BioC] hypergeometric test in GOstats   Sebastien Gerega
• [BioC] How to display chromosome rapresentation ?   Giulio Di Giovanni
• [BioC] Announcement: Deadline for new package submission   Nishant Gopalakrishnan
• [BioC] flowCore: logicle transformation of flow cytometry data   Nishant Gopalakrishnan
• [BioC] Please add hugene10stv1.cdf   Gormley, Matthew
• [BioC] Possible to set alternative colnames on read.flowSet (flowCore)   Aric Gregson
• [BioC] Cloud Plotting? flowViz/Core   Aric Gregson
• [BioC] Possible to set alternative colnames on read.flowSet (flowCore)   Aric Gregson
• [BioC] Possible to set alternative colnames on read.flowSet (flowCore)   Aric Gregson
• [BioC] Cloud Plotting? flowViz/Core   Aric Gregson
• [BioC] Axis Scales & Components After Logicle Transformation (flowViz)   Aric Gregson
• [BioC] Axis Scales & Components After Logicle Transformation (flowViz)   Aric Gregson
• [BioC] Place summary stats in names in flowViz xyplot   Aric Gregson
• [BioC] problem with createBeadSummaryData   Groot, Philip de
• [BioC] ragene10st   Groot, Philip de
• [BioC] ragene10st   Groot, Philip de
• [BioC] Possible to set alternative colnames on read.flowSet (flowCore)   Florian Hahne
• [BioC] Cloud Plotting? flowViz/Core   Florian Hahne
• [BioC] Possible to set alternative colnames on read.flowSet (flowCore)   Florian Hahne
• [BioC] Axis Scales & Components After Logicle Transformation (flowViz)   Florian Hahne
• [BioC] Place summary stats in names in flowViz xyplot   Florian Hahne
• [BioC] Problems with combineNodes in graph   Florian Hahne
• [BioC] Problems with combineNodes in graph   Michael Hahsler
• [BioC] Graphviz in Vista64   Kasper Daniel Hansen
• [BioC] FW: Graphviz in Vista64   Kasper Daniel Hansen
• [BioC] FW: Graphviz in Vista64   Kasper Daniel Hansen
• [BioC] FW: Graphviz in Vista64   Kasper Daniel Hansen
• [BioC] FW: Graphviz in Vista64   Kasper Daniel Hansen
• [BioC] FW: Graphviz in Vista64   Kasper Daniel Hansen
• [BioC] How to cope with arrays hybridized at significantly different time.   Christos Hatzis
• [BioC] Concordance correlation coefficient and data manipulation   John Herbert
• [BioC] Heatmap hints and identifying differentially expressed genes   Marietta Herrmann
• [BioC] ragene10st   Hooiveld, Guido
• [BioC] How to get NCBI's gene annotation?   Hotz, Hans-Rudolf
• [BioC] (CRLMM) an issue needs to be clarified   Ping-Hsun Hsieh
• [BioC] (CRLMM) an issue needs to be clarified   Ping-Hsun Hsieh
• [BioC] Advanced Course in Analysis of Short Read Sequencing Data   Wolfgang Huber
• [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays   Wolfgang Huber
• [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays   Wolfgang Huber
• [BioC] biomaRt error   Wolfgang Huber
• [BioC] Prix incroyables en vente privee chez Dessous Cheri   Ludovic Rouillon IA79
• [BioC] Dye effect problem with Limma package   Jean-Laurent Ichanté
• [BioC] How to generate the CDF files for Arabidopsis TilingArrays   Al Ivens
• [BioC] biomaRt error   Lakshmanan Iyer
• [BioC] Methyl-Chip - Affymetrix promoter array   Adrian Johnson
• [BioC] Analyzing MeDIP-Chip data - using Affymetrix promoter array   Adrian Johnson
• [BioC] Heatmap hints and identifying differentially expressed genes   Amy Johnson
• [BioC] Heatmap hints and identifying differentially expressed genes   Amy Johnson
• [BioC] Agi4x44PreProcess for miRNA data   Marten Jäger
• [BioC] Agi4x44PreProcess for miRNA data   Marten Jäger
• [BioC] Agilent miRNA   Marten Jäger
• [BioC] New to microarray analysis   Narendra Kaushik
• [BioC] Biomart Error   Rhoda Kinsella
• [BioC] Biomart Error   Rhoda Kinsella
• [BioC] Ensembl mart release 53: Useful information for BiomaRt users   Rhoda Kinsella
• [BioC] org.Hs.eg question   Rhoda Kinsella
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] GEOmetadb and gse organism type   Wacek Kusnierczyk
• [BioC] No degree of freedom in maanova   Marcelo Laia
• [BioC] No degree of freedom in maanova   Marcelo Laia
• [BioC] limma Time Course Experiments question   Marcelo Laia
• [BioC] GOLOCUSID   John Lande
• [BioC] GOLOCUSID   John Lande
• [BioC] Analyzing MeDIP-Chip data - using Affymetrix promoter array   Michael Lawrence
• [BioC] IRange, license and warnings   Michael Lawrence
• [BioC] Compilation or syntax error in IRanges sort_util.c package   Michael Lawrence
• [BioC] Problem memory exonmap   Guido Leoni
• [BioC] Is it normal that normalize.loess does not tolerate a single NA value?   Emmanuel Levy
• [BioC] Agi4x44PreProcess for miRNA data   Yong Li
• [BioC] Heatmap hints and identifying differentially expressed genes   Steve Lianoglou
• [BioC] txt fille   Steve Lianoglou
• [BioC] txt fille   Steve Lianoglou
• [BioC] How to cope with arrays hybridized at significantly different time.   Steve Lianoglou
• [BioC] GOstats Annotation Package   "Jörg Linde"
• [BioC] Problems with clValid: "fanny unable to find clusters"   "Jörg Linde"
• [BioC] Agi4x44PreProcess for miRNA data   Pedro Lopez-Romero
• [BioC] Agi4x44PreProcess for miRNA data   Pedro Lopez-Romero
• [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"   James MacDonald
• [BioC] annotating genes using KEGG   James W. MacDonald
• [BioC] Error in as.vector(x, mode)   James W. MacDonald
• [BioC] Choosing the transcripts for dataanalysis from GeneChip   James W. MacDonald
• [BioC] Problem with biomaRt and retrieving annotation for the chip "affy_huex_1_0_st_v2"   James W. MacDonald
• [BioC] Please add hugene10stv1.cdf   James W. MacDonald
• [BioC] question about heatmap.2   James W. MacDonald
• [BioC] [R] Need to build package for Affy HT HG-U133+ PM arrays   James W. MacDonald
• [BioC] Limma: 2 venn diagrams on single page   James W. MacDonald
• [BioC] Error message when working with sam   James W. MacDonald
• [BioC] packages for hugene10st   James W. MacDonald
• [BioC] Concordance correlation coefficient and data manipulation   James W. MacDonald
• [BioC] probe ID for affymetrix data   James W. MacDonald
• [BioC] Using as.geneSet in GeneticsBase - problems with gene.columns   Johannes Gulmann Madsen
• [BioC] Making table with SNP-ID, allele combination and genotype to verify correctness.   Johannes Gulmann Madsen
• [BioC] Analysing Illumina v2 and v3 platforms   Emanuele Marchi
• [BioC] Custom Web Design (with CMS)   David Mathew
• [BioC] FW: Graphviz in Vista64   Paweł Matykiewicz
• [BioC] Using Affymetrix PM chips with Bioconductor   James Mcininch
• [BioC] Using Affymetrix PM chips with Bioconductor   James Mcininch
• [BioC] discrepancy between BeadStudio images and beadarray imageplot   Luis Fernando Menezes
• [BioC] discrepancy between BeadStudio images and beadarray imageplot   Luis Fernando Menezes
• [BioC] question about QCReport   Saroj Mohapatra
• [BioC] heatmap_2: How to change the legend on the color key?   Saroj Mohapatra
• [BioC] heatmap_2: How to change the legend on the color key?   Saroj Mohapatra
• [BioC] annotating genes using KEGG   Saroj K Mohapatra
• [BioC] heatmap output problems in pdf   Saroj K Mohapatra
• [BioC] GOLOCUSID   Saroj K Mohapatra
• [BioC] question about heatmap.2   Saroj K Mohapatra
• [BioC] justGCRMA problem :(   Martin Morgan
• [BioC] FW: Graphviz in Vista64   Martin Morgan
• [BioC] Convert KEGGpathway to nuID in lumi   Martin Morgan
• [BioC] From eSet to AffyBatch Object   Martin Morgan
• [BioC] From eSet to AffyBatch Object   Martin Morgan
• [BioC] error with pileup function in ShortRead   Martin Morgan
• [BioC] genefilter problem   Martin Morgan
• [BioC] Problems reading multiple MAQ map files with ShortRead ReadAligned   Martin Morgan
• [BioC] Problems reading multiple MAQ map files with ShortRead ReadAligned   Martin Morgan
• [BioC] Possible bug in ShortRead pileup function   Martin Morgan
• [BioC] Possible bug in ShortRead pileup function   Martin Morgan
• [BioC] Problems reading single channel GenePix data with read.maimages.   Martin Morgan
• [BioC] Possible bug in ShortRead pileup function   Martin Morgan
• [BioC] Error in PLW package plw()   Martin Morgan
• [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays   Naira Naouar
• [BioC] Online Access Suspended 'Get Safe Online'   Abbey National
• [BioC] heatmap_2: How to change the legend on the color key?   Yen Ngo
• [BioC] heatmap_2: How to change the legend on the color key?   Yen Ngo
• [BioC] justGCRMA problem :(   Jacek Nowak
• [BioC] justGCRMA problem :(   Jacek Nowak
• [BioC] Agilent miRNA   Paulo Nuin
• [BioC] running exonmap package and chimp arrays   Michal Okoniewski
• [BioC] How to cope with arrays hybridized at significantly different time.   Michal Okoniewski
• [BioC] limma design: paired samples, two groups   Jussi Paananen
• [BioC] matchPdict error   Hervé Pagès
• [BioC] matchPdict error   Hervé Pagès
• [BioC] building a new annotation   Hervé Pagès
• [BioC] building a new annotation   Hervé Pagès
• [BioC] error with pileup function in ShortRead   Hervé Pagès
• [BioC] script line to multiply a vector by another vector or matrix   Hervé Pagès
• [BioC] assemble DNAString complete coding sequence from exons?   Hervé Pagès
• [BioC] assemble DNAString complete coding sequence from exons?   Hervé Pagès
• [BioC] Methyl-Chip - Affymetrix promoter array   Hervé Pagès
• [BioC] Problems with clValid: "fanny unable to find clusters"   Hervé Pagès
• [BioC] How to cope with arrays hybridized at significantly different time.   Triantafillos Paparountas
• [BioC] Exonmap and Limma   Mathieu Parent
• [BioC] exonmap and splicing index   Mathieu Parent
• [BioC] building a new annotation   Chirag Patel
• [BioC] biomaRt proxy issues   Steve Pederson
• [BioC] color venn diagrams   Francois Pepin
• [BioC] color venn diagrams   Francois Pepin
• [BioC] IRange, license and warnings   Pierre-Yves
• [BioC] Illumina: how to deal with locs, idat and tif files   Jean-Baptiste Poullet
• [BioC] flowCore: logicle transformation of flow cytometry data   Saumyadipta Pyne
• [BioC] Using as.geneSet in GeneticsBase - problems with gene.columns   weiliang Qiu
• [BioC] CDFs for the HT Rat 230 PM Array   Raghavan, Nandini [PRDUS]
• [BioC] ANOVA p value calculation   Adaikalavan Ramasamy
• [BioC] Curious file size issues   Adaikalavan Ramasamy
• [BioC] How to get NCBI's gene annotation?   James F. Reid
• [BioC] CDFs for the HT Rat 230 PM Array   Mark Robinson
• [BioC] Cannot find MoGene-1.0   Peter Robinson
• [BioC] Problems reading multiple MAQ map files with ShortRead ReadAligned   David Rossell
• [BioC] Possible bug in ShortRead pileup function   David Rossell
• [BioC] Possible bug in ShortRead pileup function   David Rossell
• [BioC] Mailing List of infectious disease specialists, neurological surgeons, otolaryngologists and dozens more specialties   Luis O Roy
• [BioC] Warning in mergeLevels   Oscar Rueda
• [BioC] Biomart Error   Becky Saunders
• [BioC] network analyses on genes or probesets   Markus Schmidberger
• [BioC] vsn add-on normalization   Markus Schmidberger
• [BioC] (no subject)   Jack Schultz
• [BioC] Filtering SAM results   Holger Schwender
• [BioC] Error message when working with sam   Holger Schwender
• [BioC] other human genomes, other SNP sets?   Paul Shannon
• [BioC] building a SNPlocs data package [was: other human genomes, other SNP sets?]   Paul Shannon
• [BioC] building a SNPlocs data package [was: other human genomes, other SNP sets?]   Paul Shannon
• [BioC] duplicate entries in org.Hs.egCHRLOC?   Paul Shannon
• [BioC] assemble DNAString complete coding sequence from exons?   Paul Shannon
• [BioC] running exonmap package and chimp arrays   Pete Shepard
• [BioC] generate heat map from expression ratio using preprocessed data   Pete Shepard
• [BioC] heatmap output problems in pdf   Pete Shepard
• [BioC] How to get NCBI's gene annotation?   Wei Shi
• [BioC] How to get NCBI's gene annotation?   Wei Shi
• [BioC] How to get NCBI's gene annotation?   Wei Shi
• [BioC] How to get NCBI's gene annotation?   Wei Shi
• [BioC] differential expression methods   Wei Shi
• [BioC] Differential anlaysis (limma)   Wei Shi
• [BioC] Biological duplicates   Wei Shi
• [BioC] Differential anlaysis (limma)   Wei Shi
• [BioC] Graphviz in Vista64   Sim, Fraser
• [BioC] FW: Graphviz in Vista64   Sim, Fraser
• [BioC] FW: Graphviz in Vista64   Sim, Fraser
• [BioC] FW: Graphviz in Vista64   Sim, Fraser
• [BioC] FW: Graphviz in Vista64   Sim, Fraser
• [BioC] KEGGgraph question   Sim, Fraser
• [BioC] KEGGgraph question   Sim, Fraser
• [BioC] org.Hs.eg question   Sim, Fraser
• [BioC] org.Hs.eg question   Sim, Fraser
• [BioC] org.Hs.eg question   Sim, Fraser
• [BioC] limma printer layout   Gordon K Smyth
• [BioC] Three questions about processing Agilent Arrays   Gordon K Smyth
• [BioC] LIMMA, behaviour of 'lmFit': warnings   Gordon K Smyth
• [BioC] Dye effect problem with Limma package   Gordon K Smyth
• [BioC] handling multiple gal files in limma   Gordon K Smyth
• [BioC] Getting additional columns from Imagene files with read.maimages from limma   Gordon K Smyth
• [BioC] Beadarray error: comparison of types not implemented   Anne-Kristin Stavrum
• [BioC] How to cope with arrays hybridized at significantly different time.   Juan Pedro Steibel
• [BioC] packages for hugene10st   Tobias Straub
• [BioC] Error in HyperGTest with GOHyperGParams class   Mayte Suarez-Farinas
• [BioC] packages for hugene10st   Mayte Suarez-Farinas
• [BioC] President Ellen Johnson Sirleaf, Project Runway's Korto Momolu & Activist Kimmie Weeks   THEORACLEGROUP.NET
• [BioC] limma and 3 group design   Daren Tan
• [BioC] Limma: 2 venn diagrams on single page   Daren Tan
• [BioC] XPS vs APT   Daren Tan
• [BioC] Bioconductor Digest, Vol 73, Issue 25   Bogdan Tanasa
• [BioC] tilingArray: error message   Hui Tang
• [BioC] tilingArray: error message in function segment()   Hui Tang
• [BioC] Normalize data across platforms   Steve Taylor
• [BioC] Normalize data across platforms   Steve Taylor
• [BioC] Halifax Bank Secure Message   Halifax Bank Secure Team
• [BioC] How to cope with arrays hybridized at significantly different time.   Paparountas Triantafyllos
• [BioC] New to microarray analysis   Philip Twumasi-Ankrah
• [BioC] From eSet to AffyBatch Object   Boris Umylny
• [BioC] From eSet to AffyBatch Object   Boris Umylny
• [BioC] From eSet to AffyBatch Object   Boris Umylny
• [BioC] Consulting project   Boris Umylny
• [BioC] Choosing the transcripts for dataanalysis from GeneChip   Bjoern Usadel
• [BioC] Research positions available in neuroproteomics   Abhilash Venu
• [BioC] dye swap control: discrepancy of correlation between R vs R and M vs M   Christine Voellenkle
• [BioC] Gostats and custom list   Iain Wallace
• [BioC] Error when loading xps   Michael Walter
• [BioC] Error when loading xps   Michael Walter
• [BioC] RG.MA in limma   Wang, Jixin
• [BioC] RG.MA in limma   Wang, Jixin
• [BioC] RG.MA in limma   Wang, Jixin
• [BioC] RG.MA in limma   Wang, Jixin
• [BioC] RG.MA in limma   Wang, Jixin
• [BioC] probe ID for affymetrix data   Xingmei Wang
• [BioC] probe ID for affymetrix data   Xingmei Wang
• [BioC] Package "xps" import.data error   Wang, Yonghong (NIH/NCI) [C]
• [BioC] 2 sample t test using xps package   Wang, Yonghong (NIH/NCI) [C]
• [BioC] self-self hybridisations to estimate dye-bias   Nathan S. Watson-Haigh
• [BioC] question about heatmap.2   Christof Winter
• [BioC] feature selection according to sequence information   Christof Winter
• [BioC] RG.MA in limma   Peder Worning
• [BioC] RG.MA in limma   Peder Worning
• [BioC] dye swap control: discrepancy of correlation between R vs Rand M vs M   Peder Worning
• [BioC] Getting additional columns from Imagene files with read.maimages from limma   Peder Worning
• [BioC] error message from bioMart   Di Wu
• [BioC] color venn diagrams   Yannick Wurm
• [BioC] Basic question reading special chars using read.table   Yannick Wurm
• [BioC] genefilter problem   Wayne Xu
• [BioC] genefilter problem   Wayne Xu
• [BioC] question about heatmap.2   Wei Xu
• [BioC] question about heatmap.2   Wei Xu
• [BioC] Filtering SAM results   Assa Yeroslaviz
• [BioC] Error message when working with sam   Assa Yeroslaviz
• [BioC] time series analysis in samr   Assa Yeroslaviz
• [BioC] question about QCReport   Yan Zhang
• [BioC] difficulty of using getSYMBOL with lumi nuID   Zhang,Jiexin
• [BioC] difficulty of using getSYMBOL with lumi nuID   Zhang,Jiexin
• [BioC] GEO metadata   Jack Zhu
• [BioC] GEOmetadb and gse organism type   Jack Zhu
• [BioC] GEOmetadb and gse organism type   Jack Zhu
• [BioC] txt fille   Joanna Zyprych
• [BioC] Bioconductor Digest, Vol 73, Issue 8   ramesh aathe
• [BioC] color venn diagrams   oliveros at cnb.csic.es
• [BioC] Package "xps" import.data error   cstrato
• [BioC] Package "xps" import.data error   cstrato
• [BioC] Package "xps" import.data error   cstrato
• [BioC] 2 sample t test using xps package   cstrato
• [BioC] cdf and probe for HT HG-U133+ PM Array Plate   cstrato
• [BioC] Error when loading xps   cstrato
• [BioC] How to do RMA normalize.   cstrato
• [BioC] XPS vs APT   cstrato
• [BioC] Rma method for library xps   cstrato
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] Xps package : errors and RMA difference with Partek GS   cstrato
• [BioC] arrayQualityMetrics -weighted bad spots Imagene files   audrey at ebi.ac.uk
• [BioC] arrayQualityMetrics -weighted bad spots Imagene files   audrey at ebi.ac.uk
• [BioC] LIMMA, behaviour of 'lmFit': warnings   J.delasHeras at ed.ac.uk
• [BioC] LIMMA, behaviour of 'lmFit': warnings   J.delasHeras at ed.ac.uk
• [BioC] flowCore: logicle transformation of flow cytometry data   fhahne at fhcrc.org
• [BioC] RmiR, request for new package   ngopalak at fhcrc.org
• [BioC] How to do RMA normalize.   kenzy ken
• [BioC] differential expression methods   Mohamed lajnef
• [BioC] Differential anlaysis (limma)   Mohamed lajnef
• [BioC] helps about exporting with limma   bo li
• [BioC] lokalisten: dein registrierungs-code   register at lokalisten.de
• [BioC] How to display chromosome rapresentation ?   J.Oosting at lumc.nl
• [BioC] Basic question reading special chars using read.table   David martin
• [BioC] Basic question reading special chars using read.table   David martin
• [BioC] Basic question reading special chars using read.table   David martin
• [BioC] Package celeganscdf_1.4.3.tar.gz has been checked and built   Uwe.Ligges at r-project.org
• [BioC] annotating genes using KEGG   dhaarini s
• [BioC] annotating genes using KEGG   dhaarini s
• [BioC] Biological duplicates   ab19 at sanger.ac.uk
• [BioC] Convert KEGGpathway to nuID in lumi   ss
• [BioC] error message from bioMart   steffen at stat.Berkeley.EDU
• [BioC] Biomart Error   steffen at stat.Berkeley.EDU
• [BioC] How to generate the CDF files for Arabidopsis Tiling Arrays   zhen tao
• [BioC] Help   fei tian
• [BioC] Rma method for library xps   carissimo at tigem.it
• [BioC] using GOSim with yeast genes   prsmra01 at uniroma2.it
• [BioC] Error in PLW package plw()   davidl at unr.nevada.edu
• [BioC] Error in PLW package plw()   davidl at unr.nevada.edu
• [BioC] program suggestion - weighted averaging of multiple probes   alison.waller at utoronto.ca
• [BioC] Single channel spike in controls with custom microRNA slides - Normalization help needed   david vilanova
• [BioC] Single channel spike in controls with custom microRNA slides - Normalization help needed   david vilanova
• [BioC] reading probe ID file   kuntal worah
• [BioC] Course - March/April ** R / Splus ** course in New York City and San Francisco*** by XLSolutions Corp   sue at xlsolutions-corp.com
• [BioC] feature selection according to sequence information   qinghua xu
• [BioC] Un site internet pour votre bien immobilier pour bioconductor de stat.math.ethz.ch   ymmoo.info
• [BioC] Help on: Resizing the plot of a dendrogram when plotting clusters   maon yskmohc
• [BioC] Help on: Resizing the plot of a dendrogram when plotting clusters   maon yskmohc
• [BioC] protein function prediction for transcript isoforms   shirley zhang
• [BioC] visualization and alignment of affymetirx probe sequence to transcripts   shirley zhang
• [BioC] visualization and alignment of affymetirx probe sequence to transcripts   shirley zhang

Last message date: Tue Mar 31 23:13:23 CEST 2009
Archived on: Tue Mar 31 23:14:42 CEST 2009

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